Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02825 ATGGACAAGAAAATATGCAACTTGTCTCAAGATCCCGAAGTGAGAAAGGGGCCTTGGACAATGGAAGAAGACTTGATCTTGATCAACTACATAGCCAATCATGGAGAAGGTGTCTGGAATTCCTTGGCCAAAGCTGCTGCATATATGTTTTCAGGTCTTAAACGTACGGGAAAGAGTTGTAGGCTTCGGTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCCAAGCATCTACCTGGAAGAACTGATAATGAGATCAAGAACTACTGGAGGACTAGGATCCAAAAGCACATCAAACAAGCTGAGAACTTCCAGCAACAAAATTCTGATCATCAAGCAAGCAGTAGCCAACTGTCCACCATGGCTGAGCCCATGGAGACATGCTCTCCATCCTCTTACCAAGCAATTTTGGAGCCATTTCCAACTCAGTTCCCCACAATCCCTGAACAATCTGGTTGTTGTACCAGTGACAACAATTATTGGAGCATGGAGGATATCTGGTCAATGCAATTACTAAATGGGGATTAA 603 0.4378 MDKKICNLSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAAYMFSGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENFQQQNSDHQASSSQLSTMAEPMETCSPSSYQAILEPFPTQFPTIPEQSGCCTSDNNYWSMEDIWSMQLLNGD. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02825 200 Gene3D - 16 73 - -
Seca2g02825 200 ProSiteProfiles Myb-like domain profile. 11 68 IPR001005 -
Seca2g02825 200 MobiDBLite consensus disorder prediction 127 149 - -
Seca2g02825 200 SUPERFAMILY Homeodomain-like 13 115 IPR009057 -
Seca2g02825 200 CDD SANT 78 117 IPR001005 -
Seca2g02825 200 Gene3D - 78 147 - -
Seca2g02825 200 SMART sant 73 121 IPR001005 -
Seca2g02825 200 SMART sant 15 70 IPR001005 -
Seca2g02825 200 Coils Coil 119 139 - -
Seca2g02825 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Seca2g02825 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 68 IPR017930 -
Seca2g02825 200 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 152 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca2g02825 200 FunFam Myb-related protein 305 78 147 - -
Seca2g02825 200 CDD SANT 18 68 IPR001005 -
Seca2g02825 200 FunFam Myb transcription factor 16 73 - -
Seca2g02825 200 Pfam Myb-like DNA-binding domain 16 68 IPR001005 -
Seca2g02825 200 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Seca2g02825 200 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02825 Seca-Chr2 83055002 83059649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02825 10 200 MYB Transcription Factor Family AT3G01530 60.914 3.36e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g02825 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02825 K09422 - gmx:778046 352.829