Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02815 ATGCTTCCACTGCAATTCAGCATCCACCCTCATCCTCAATTCCCATTGCTGAGCAGCATCAACACTTGTTCCTTCTGTCCCACGCCTCGCTCCCTCTTCAACCCCGACAACAACAACAACAAGCACTGTTTTCTTCGCTCCAATGTCGGAAGCCTCAACCTTAGGGTTTTTGCAATGTCTGATAACTCCGCCTTCAAAATGAACCTTAATGAGTACCTCGTCACTCTTGAGAAGCCCCTTGGCATCCGATTCGCTCTCACCGCCGACGGAAAAATCATTGTCCACTCTCTCACCAAAGGGGGTAATGCGGAGAGGTCCCGGATAATTATGGTGGGTGACACTTTGAAGAAAGCTGGCGATTCCTCTCAGAATAGTCTCGTCGAGATTAAAGACGTTGGAGATACACAGAAGGTGCTCAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCCATACAACTACTGCATAAGATGAATGATCTAGAAATAGTGTTTAATAGAGGTCGAGTTCCTATTGCCACGTGGAACAAGACACTATTGGCATCAAATTTGCAACCTTCTAATGAGAGCTGTGGGAATTCTGGATTTTTGATGTTCAACTCAAAGTTTCTTAAATCAAATGGAAGCAAGTTATTGGTCAATCAAAATCAACATGCCATCACCCATGGTGAGAGACATTTCTTAACTGAACACACAACACAACTTGCTTGTATTTTTACTGAAGAAGAGTATGGAGATGGAGACTGGGGTCATGGAAGTTTTCCACTTGAGGAATATATTCAGGCTCTGGATCGTTCCAAGGATGAGATGTACTATAATCACTCACTTGGTATGCGTTATAGTAAGATTACAGAGCAAATATATGTGGGATCTTGTATACAAACAGAAGATGATGTGGAAACCTTGTCAAAAGTTGAGGGAGTTACTGCTGTGCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAATGACTCTTGTCAAAGGAATAATATTCTCATGATAAACTATCCTATACGGGAGGGAGATTCTTATGATATGAGAAAAAAACTTCCATTTTGTGTGGGGCTTCTATTACGGTTGCTAAGAAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTAATTGCATACCTACATTGGATGACAGACGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACGTGCAGGCCTGACAGGCCAGCAATTGCTTGGGCAACATGGGATCTTATAGCTATGGTTGAAAGGGGCAAACATGATGGACCTCCCACACATGCCATCACATTTGTGTGGAATGGTCATGAGGGAGAGGATGTAACTTTAGTGGGAGACTTTACTGGAAATTGGAAAGAACCACTCAGGGCAAACCACCAGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATGTATGCTACTTTTACAATTATTTCTTTTTCTCTCTCTGCTTGACGACCTCATTGGCTAAAAATTCTCACAAGCCATTTTCTTATATCCTAACCAGTGTCATTTATTTGATTTTTATTTTCTAA 1623 0.4202 MLPLQFSIHPHPQFPLLSSINTCSFCPTPRSLFNPDNNNNKHCFLRSNVGSLNLRVFAMSDNSAFKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNSLVEIKDVGDTQKVLKEQTSSFSLVLERPTSPFPIQLLHKMNDLEIVFNRGRVPIATWNKTLLASNLQPSNESCGNSGFLMFNSKFLKSNGSKLLVNQNQHAITHGERHFLTEHTTQLACIFTEEEYGDGDWGHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGVTAVLNFQSGTEAENWGINVKSINDSCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAITFVWNGHEGEDVTLVGDFTGNWKEPLRANHQGGSRHEVEVKLPQGKYVCYFYNYFFFSLCLTTSLAKNSHKPFSYILTSVIYLIFIF. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02815 540 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 40 504 - -
Seca2g02815 540 ProSiteProfiles PDZ domain profile. 73 154 IPR001478 GO:0005515
Seca2g02815 540 CDD E_set_AMPKbeta_like_N 453 501 - -
Seca2g02815 540 SUPERFAMILY E set domains 450 507 IPR014756 -
Seca2g02815 540 SUPERFAMILY PDZ domain-like 75 169 IPR036034 GO:0005515
Seca2g02815 540 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 276 419 IPR029021 -
Seca2g02815 540 ProSiteProfiles Dual specificity protein phosphatase domain profile. 286 448 IPR020422 GO:0006470|GO:0008138
Seca2g02815 540 Gene3D Immunoglobulins 448 510 IPR013783 -
Seca2g02815 540 Gene3D Protein tyrosine phosphatase superfamily 276 447 IPR029021 -
Seca2g02815 540 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 279 446 - -
Seca2g02815 540 Pfam Dual specificity phosphatase, catalytic domain 296 416 IPR000340 GO:0008138|GO:0016311
Seca2g02815 540 CDD DSP_laforin-like 285 431 IPR045204 GO:0019203
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02815 Seca-Chr2 82535071 82549851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02815 138 509 Protein tyrosine phosphatase (PTP) family AT3G01510 66.398 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02815 - - gmx:100814503 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g02815 2 82535071 82549851 Seca2g02815 2 82535071 82549851 ECH