Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02809 ATGGCAGCAGCTTCAATTCCAACTTCAACAATACCATCTCATGTAAAAGCTTGGGTCTATTCTGAACACGGGAAGCCAAAAGATGTTCTGAAGTTCGATACTAATTTGCCTCTTACTGAAGTCAAACTAGATCAGGTACTAATCAAGGTTATTGCTGCTGCCATTAATCCCATAGATTTTGCAAAGATTCAAGGACATTACAAGGACAGTGACTCTCCTTTTCCAATTGTTCCAGGCTATGACGTTGCTGGTGTGGTGGTCAAAGTAGGAACTGAAGTAAAGAAATTTAAGGAAGGGGATGAAGTTTATGGTATTGTTGAGGGAAAAGATGTTGGGTCTTTGGCCGAGTATACAACTGCTGAAGAGAAAGGTTTGGCTTACAAGCCACCTAATTTGAGCTTTGCTGAAGCTGCTAGCCTTCCTTTAGCAATTGAGACTGCTTATGGAAGCCTTGAGAAAATTGGGCTTTCAGCTGGTCAATCTATCCTTGTTTTAGGAGGTGGTGGTGGTGTCGGCACACTTGTTGTTCAGATTGCCAAACAAGTTTTTGGTGCTTCTAAGGTGGCAGCTACTGCCAGCACTGGAAAACTGGAATTGTTGAGGAAGGTGGGAGCTGACTTGGCTATTGATTACACAAAGGAGAATTTTGAAGACCTGCCTGAAAAGTTTGATGTAGTTTATGTTGGAGCCGGACAGACTGACAACAGGGCATTCAAGGCTGTCAAAGAAGGAGGCAAAGTAGTGACAATAATACCTCCTGGAGTTCCACCCGCTATCTTGTTCATACTCACTTCTGATGGGGCTTTCTTAGACAAATTAGGACCTTATTTGGAGAGTGGCAAGTTGAAGCCAATACTTGACCCCAAGAGTCCATTTCCATTTTCTCAGACTGTTGAAGCAATTTCCTATCTGGAAACAGGCAGAGCTGCTGGAAAAGTAGTCATTCATCCCATTCCATAA 960 0.4292 MAAASIPTSTIPSHVKAWVYSEHGKPKDVLKFDTNLPLTEVKLDQVLIKVIAAAINPIDFAKIQGHYKDSDSPFPIVPGYDVAGVVVKVGTEVKKFKEGDEVYGIVEGKDVGSLAEYTTAEEKGLAYKPPNLSFAEAASLPLAIETAYGSLEKIGLSAGQSILVLGGGGGVGTLVVQIAKQVFGASKVAATASTGKLELLRKVGADLAIDYTKENFEDLPEKFDVVYVGAGQTDNRAFKAVKEGGKVVTIIPPGVPPAILFILTSDGAFLDKLGPYLESGKLKPILDPKSPFPFSQTVEAISYLETGRAAGKVVIHPIP. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02809 319 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 8 319 IPR044626 GO:0016628
Seca2g02809 319 SMART PKS_ER_names_mod 25 315 IPR020843 GO:0016491
Seca2g02809 319 Gene3D - 151 266 - -
Seca2g02809 319 Pfam Alcohol dehydrogenase GroES-like domain 44 103 IPR013154 -
Seca2g02809 319 Gene3D - 22 315 - -
Seca2g02809 319 Pfam Zinc-binding dehydrogenase 204 315 - -
Seca2g02809 319 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 159 180 IPR002364 GO:0008270|GO:0016491
Seca2g02809 319 CDD MDR_like_2 16 315 - -
Seca2g02809 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 132 285 IPR036291 -
Seca2g02809 319 SUPERFAMILY GroES-like 12 164 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02809 Seca-Chr2 82342989 82345027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02809 44 129 Monolignol Biosynthesis Gene Families AT2G21890 31.034 9.63e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02809 K18980 - gmx:100817947 401.364