Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02795 ATGTATAGAATACTATCGACGCCGGCGTCAAAGTTCCGCCAATTCCGGCGACTACGCTCGAGACCTCCGACGACCGATGCGACCGACGAGGAACAGGCCAACCATATCCTATGGCGGTACCAGATCCTGGACCCAGACAGCGAGATTGTGGCGTATTGGAACAAAGTGTTCCTTGTGACCAGCCTCCTCGCCCTCTTCGTCGACCCTCTTTACTTCTTCATCCCAACCGTTGGTGGCCCTGCTTGCGTGCAGGGAGACCCCAATCTCGGCATCTTGGTTACCATTCTCCGCTCCTTCGCCGATCTCTTCTATCTCCTCCACATGATCATGAAGTTTCGCACTGCCTATGTTGCCCCCAATTCTAGAATCTTCGGTCGTGGTGACCTCGTCATGGATGCACGCCAAATCGCCCTCCGTTACTTGAAGTCTGATTTTGTTATCGACCTTGCTGCCACCATCCCTCTCCCACAGATTGTGATTTGGTTAGTCATTCCAGCTAGTAGAGGCGCAAGAAGTGATCATACCAACAACACTCTTGCACTTTATGTTCTTATTCAGTATGTTCCTAGACTGTTTCTTATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGTGTTATCGCCAAGACTCCCTGGATTGGTGCCGCCTATAATCTTGTTCTCTACATGCTAGCTAGTCATGTAAGCCCCATCCCACCTGTTTTTCTCTTCCTTATGTATGTTATTTACTCACTGGGTTTGTGTTTTTATTGTTTAACTATCGTTACTGGAGCAACTTGGTATCTATCGTCAATAGGGAGACAATTTAACTGCTGGAAAGCACAGTGCGAACTGGAAAATAAATCACATACCCTCTCTTGCTTGCCTAGTTATCTTGATTGTAACAGTTTGAATCTCCCTGAAAGGCAATACTGGCTTAATATCACTCGTGTTGTTAGCAAATGCGATGCAAAGACCAAGATCAACATCAAATACAAGTTTGGGATGTTCGCAGATGCATTCTTGAATGATGTTGTTACTTCCAGTTTTAAGGAAAGATACTTTTATTGTCTTTGGTGGGGTCTAAGAAATTTAAGCTCCTATGGACAGAATTTGGACACCACCACATACCTTCCCGAGATAGTTTTTTGCATCGTCTTATGTATTGCTGGATTAGTTCTCTTTTCACTTTTGATTGGAAACATGCAGACATACTTGCAATCCATGTCAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGACACTGAGGAGTGGATGAGGCATCGCCAGTTACCTCCAAATTTGCAGGAACGTGTCCGTCGCTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTAAATGAAGAGGCCATACTGCTTTCATTACCTTTGGATCTTCGTCGTGAAATTCAACATCATTTGTGTCTTTCTCTTGTGCGGCGTGTCCCTTTCTTCTCACAAATGGATGATCAGCTACTTGATGCCATTTGTGAACGCCTTGTGTCATCATTGAGCACTCAAGGCACCTACATATTTAGAGAGGGTGATCCAGTAGATGAAATGTTGTTTATCATTAGAGGGCAATTGGAGAGCTCTACAACCAATGGAGGAAGGTTTGGATTCTTCAATTCCATCACACTTAGGCCTGGTGACTTTTGTGGAGAAGAATTGTTGACATGGGCCTTATTGCCAAACTCAACCCTCAACCTACCTTCCTCTACTCGTACTGTCAGAGCTCTTACTGAAGTTGAAGCTTTTGCGCTAGAGGCAGAGGATTTGAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAGCATGCATTTAGGTATTATTCCCATCAATGGAGGACATGGGGTTCTTGCTTCATACAAGCTGCCTGGAGAAGGTATCAGAAAAGGAAGGCAACAAGGGAGTTATCCCTGAAAGAGAGACTCTACGACATGGAAGAGCCTGAGAGGGAGGATAGTTATTACATCGTGAAAAATGTTAAAAATCTTGGTGCAACTGTTTTAGCCTCAAAGTTTGCTGCCAATACAAAGAAAGGGAACAAGCTTCAAGGCAGTGATCCTGTGCCGCAATTGTTCAAGCCAGTTGAACCTGATTTCTCTATAGACCATGAAGAAGTTTAG 2127 0.4438 MYRILSTPASKFRQFRRLRSRPPTTDATDEEQANHILWRYQILDPDSEIVAYWNKVFLVTSLLALFVDPLYFFIPTVGGPACVQGDPNLGILVTILRSFADLFYLLHMIMKFRTAYVAPNSRIFGRGDLVMDARQIALRYLKSDFVIDLAATIPLPQIVIWLVIPASRGARSDHTNNTLALYVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVSPIPPVFLFLMYVIYSLGLCFYCLTIVTGATWYLSSIGRQFNCWKAQCELENKSHTLSCLPSYLDCNSLNLPERQYWLNITRVVSKCDAKTKINIKYKFGMFADAFLNDVVTSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPEIVFCIVLCIAGLVLFSLLIGNMQTYLQSMSVRLEEWRIRKRDTEEWMRHRQLPPNLQERVRRFVQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFREGDPVDEMLFIIRGQLESSTTNGGRFGFFNSITLRPGDFCGEELLTWALLPNSTLNLPSSTRTVRALTEVEAFALEAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYQKRKATRELSLKERLYDMEEPEREDSYYIVKNVKNLGATVLASKFAANTKKGNKLQGSDPVPQLFKPVEPDFSIDHEEV. 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02795 708 Gene3D Jelly Rolls 477 597 IPR014710 -
Seca2g02795 708 Gene3D - 73 402 - -
Seca2g02795 708 CDD CAP_ED 479 610 IPR000595 -
Seca2g02795 708 SUPERFAMILY Voltage-gated potassium channels 44 401 - -
Seca2g02795 708 Pfam Cyclic nucleotide-binding domain 502 590 IPR000595 -
Seca2g02795 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 248 700 - -
Seca2g02795 708 SMART cnmp_10 479 610 IPR000595 -
Seca2g02795 708 ProSiteProfiles cAMP/cGMP binding motif profile. 479 609 IPR000595 -
Seca2g02795 708 FunFam Cyclic nucleotide-gated ion channel 1 477 595 - -
Seca2g02795 708 MobiDBLite consensus disorder prediction 681 708 - -
Seca2g02795 708 SUPERFAMILY cAMP-binding domain-like 409 604 IPR018490 -
Seca2g02795 708 FunFam Cyclic nucleotide-gated ion channel 1 406 470 - -
Seca2g02795 708 Pfam Ion transport protein 52 406 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca2g02795 708 Gene3D Helix hairpin bin 403 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02795 Seca-Chr2 81335360 81339692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02795 14 708 Ion Channels AT5G14870 64.344 0.0 967
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02795 K05391 - gmx:100802812 1209.13