Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02790 ATGTATCGCCAGTGGTCTTTTGACCATACCCATTTGAAGATGGCTTGGATTCAGCATCAAATCCATCAAAAAGATGGTTACATGAGCTACCCACCAGTTTTGCCTTCACCTTCATCCCCATATTCCCACAAAGAATCAATGTCTACATCATCACCTGGTGCTAGAATTAGTCCTGCTGTTCTTTTTATCATAGTGATTCTGGCTGTTCTATTTTTCATTTCGGGTCTGCTCCACTTGCTTGTTAGATTTCTCATAAAGAACCCATCTTCTTCCTCAGCATCTGCTCAATCTAATAATAGACACCAGGAAATGTCTACCTCTGATGCTCTTCAGAGACAGCTGCAACAACTTTTCCATCTTCATGACTCTGGTCTTGACCAGGCTTTTATTGATGCACTTCCTGTTTTCCAGTATAAAGAGATTAAGGGACTGAAGGAGCCATTTGACTGTGCTGTTTGTCTCTGTGAATTTTCTGAAAAGGATAAGCTCAGGTTGCTCCCTATGTGTAGCCATGCTTTTCATATAAATTGTATAGACACCTGGCTTCTATCAAACTCCACATGCCCACTTTGTAGGGGAACCCTCCTTACTTCCATTGAAAATCCAATATATGATTTTGATGATTTGAGGGATGATGAGGGCTGCCCTTGTAATGGAGAAAATGAATTTGTGGCTAGACAAAAAACAGTTGAAATTCAAGAAACTGTAGAGAAAGGGGTTTTCCCTGTAAGACTTGGTAAATTCAGAAGGTTGGATGTGGAGGCAGTGGAGAATGGAGAAGGAGGAGAGACTAGTAGCAGTAATTTGGATGCAAGAAGATGTTACTCCATGGGATCTTACCAATATGTTCTTGGCAACTCTGACCTCCAGATAGCCTTGAACCATGACCTGCAAATTCGTGATGCAAAGCTCATGGAAGGAAATGAAAACTTGGAGAAGCATTCAGTTGAGGGGGATATTGAAGCAAAGAAGATTAGAAGTGTTAGTAAAGGTGAGAGCTATTCTGTTTCCAAAATCTGGCAGTGGTCAAATAAGGGCAAATTTTCAGTTTCTTCTGATGCCCAGATGGGTATGCCATCTTCCCTTAGCACAGACTTGCCTTGGATGAGGGAAACAGCAGGGACATGA 1128 0.4167 MYRQWSFDHTHLKMAWIQHQIHQKDGYMSYPPVLPSPSSPYSHKESMSTSSPGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSSASAQSNNRHQEMSTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLLTSIENPIYDFDDLRDDEGCPCNGENEFVARQKTVEIQETVEKGVFPVRLGKFRRLDVEAVENGEGGETSSSNLDARRCYSMGSYQYVLGNSDLQIALNHDLQIRDAKLMEGNENLEKHSVEGDIEAKKIRSVSKGESYSVSKIWQWSNKGKFSVSSDAQMGMPSSLSTDLPWMRETAGT. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02790 375 SUPERFAMILY RING/U-box 129 198 - -
Seca2g02790 375 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Seca2g02790 375 MobiDBLite consensus disorder prediction 352 375 - -
Seca2g02790 375 CDD RING-H2_EL5-like 149 192 - -
Seca2g02790 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 198 IPR013083 -
Seca2g02790 375 FunFam RING-H2 finger protein ATL46 112 197 - -
Seca2g02790 375 Pfam Ring finger domain 149 192 IPR001841 -
Seca2g02790 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 52 340 - -
Seca2g02790 375 SMART ring_2 150 191 IPR001841 -
Seca2g02790 375 MobiDBLite consensus disorder prediction 352 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02790 Seca-Chr2 81041604 81042731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02790 44 347 C3H Transcription Factor Family AT2G18650 41.449 3.54e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02790 - - cave:132183306 516.538