Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02788 ATGGAAAGAATTTCTTTCTGGGTAGTCTTCACTGCATCTCTTTTCCTCCTAAACATGACTACTTGTGTGGAGGATGAGGTCAAGAGAACACTGATACAGTTCCTGGAACAACTCTCTGGTAATAATAATGGCCAACAGAATTCCTTTTTGGATTGGAAATCAGACTCTGATCCCTGCACAGACCACTGGCAAGGTGTATACTGTGATGCTCAAAATATGTCTATAAAGAGGTTGAATCTTGACCGGTTCAATTTTTCTGGAACTCTTGATGTTGCTATGCTTTGTAACTTGCAGCCCCTAGCTGCATCTCTCACCTTTCTCAGTCTTGATGGAAACAATATTAGTGGAGGGATAACAGCTGAGATTGGAAACTGCAAACAACTCACTCGCCTGCATGTAAGTGGAAACCAACTTGCTGGAGACCTTCCTAGTTCACTCACCATGTTAAATAATTTGAAAATGCTAGACATTTCCAACAATAAGTTTTCAGGACCCTTGCCAGACTTGTCCAGAGTTTCAGGGCTGAATATGTTCCTTGCACAAAACAATAACCTCAGTGGAGATATACCTCCATTTCATTTCTCCAATTTTGACAAATTCAATGTCTCCTTCAACAATTTCAGTGGCCTCATTCCAGATGTGCATGGCTATTTCTTTGAAGACAGCTTCCTTGGTAATCCTGAACTCTGTGGAGATCCATTACCAAAAAATTGTTCTGGTCTTCCTCTGTCTGTTAGTGACACATCAGAAGGATCAAAGGGTCCTTCTGAAGAACAGATTCTTATGTATTCAGGCTATGCTGCATTAGGTGTTGTCCTTATCCTATTTGTTGTCTTAAGGCTGTGTAGAAGAAAGAAGAAGGGAAAGAAAATAGAAGCATTGAATGGGGTAGTGGCAACTGATGGTGGGATTGAAAAGGCCAGCAATGTTTCCAGTGAATACAAAGCAGAGGTAAGTAGGTCTGAGTTTTCAATCAACTCTGAAAGTGGGATGGTTTCACAATCACTTATAGTTCTTTCAAGGCCAGTGGTCAATGAATTGAAATTGGAGGACTTGCTGAGGGCCCCTGCTGAATTGATTGGCAGAGGAAAGAATGGAAGTCTTTATAAGGTGATGCTTGCCAATGGGGTAATGGTGGTTGTGAAAAGGATCAAGGATTGGACAATTTCCAGCCATGACTTCAAGCAAAGAATGCAGATGCTGAGTCAAGCAAAGCACCCTCATGTACTGTCACCTCTTGCTTTCTATTGTTCCAAACAAGAGAAGCTTTTGGTCTATGAATATCAGCAGAATGGAAGTTTATTCAAGCTTCTACATGGAACTTCAAAAACCTTTGACTGGACCAGCAGACTTGGATATGCAGCTATGATTGCTGAGGCACTAGCTTTCATGCATCAAGAGCTTGGCCAACATGGTATTGTTCATGGTAATCTGAAATCCTCCAACATTTTGCTAAACAACAACATGGAGCCATGTATAAGTGAGTATGGTGTTATGTGTATGGATGATGAACAAAGTTTATCTTTTGCCAGTCCAATTGGTGGCTTCAAGGGAGATGTTTATGGCTTTGGTGTTATTCTTCTTGAACTGCTTACTGGAAAGTTAGTGAAGAGTAATGGGATTGATTTGACTGATTGGGTTCAGTCAGTTGTGAGAGAAGAATGGACAGGGGAAGTCTTTGACAGGTCCTTATTTTCAGAGTATGCAAGTGAAGAGAGGATGGTCAATTTGCTTCAGGTGGCTATTAGATGTGTCAATCGTTCCCCAGAGGCTAGACCAACTATCAACCAAGTTGCTCTTTTGATTAACACTATAAAAGAGGAAGAAGAAAAGTCCTTGATTTACGAAGTGTGA 1854 0.4099 MERISFWVVFTASLFLLNMTTCVEDEVKRTLIQFLEQLSGNNNGQQNSFLDWKSDSDPCTDHWQGVYCDAQNMSIKRLNLDRFNFSGTLDVAMLCNLQPLAASLTFLSLDGNNISGGITAEIGNCKQLTRLHVSGNQLAGDLPSSLTMLNNLKMLDISNNKFSGPLPDLSRVSGLNMFLAQNNNLSGDIPPFHFSNFDKFNVSFNNFSGLIPDVHGYFFEDSFLGNPELCGDPLPKNCSGLPLSVSDTSEGSKGPSEEQILMYSGYAALGVVLILFVVLRLCRRKKKGKKIEALNGVVATDGGIEKASNVSSEYKAEVSRSEFSINSESGMVSQSLIVLSRPVVNELKLEDLLRAPAELIGRGKNGSLYKVMLANGVMVVVKRIKDWTISSHDFKQRMQMLSQAKHPHVLSPLAFYCSKQEKLLVYEYQQNGSLFKLLHGTSKTFDWTSRLGYAAMIAEALAFMHQELGQHGIVHGNLKSSNILLNNNMEPCISEYGVMCMDDEQSLSFASPIGGFKGDVYGFGVILLELLTGKLVKSNGIDLTDWVQSVVREEWTGEVFDRSLFSEYASEERMVNLLQVAIRCVNRSPEARPTINQVALLINTIKEEEEKSLIYEV. 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02788 617 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Seca2g02788 617 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Seca2g02788 617 Gene3D Ribonuclease Inhibitor 27 195 IPR032675 -
Seca2g02788 617 Gene3D Transferase(Phosphotransferase) domain 1 430 616 - -
Seca2g02788 617 FunFam Nuclear pore complex protein NUP107 24 191 - -
Seca2g02788 617 SUPERFAMILY Protein kinase-like (PK-like) 357 599 IPR011009 -
Seca2g02788 617 PANTHER OS05G0588300 PROTEIN 11 607 - -
Seca2g02788 617 ProSiteProfiles Protein kinase domain profile. 354 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02788 617 Gene3D Ribonuclease Inhibitor 196 240 IPR032675 -
Seca2g02788 617 Gene3D Phosphorylase Kinase; domain 1 323 428 - -
Seca2g02788 617 Pfam Protein kinase domain 358 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02788 617 SUPERFAMILY L domain-like 47 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02788 Seca-Chr2 81010149 81013340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02788 30 606 Receptor kinase-like Gene Family AT1G68400 34.543 3.76e-89 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca2g02788 Pkinase 4.3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02788 - - gmx:100813796 941.414