Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02784 ATGTCACCTTTTTTTTTACAGCCAGCTATGCACGGGGAATTTGATCCCGCTGTTCTGGCCTCTTTGCCCCCATCAATGCAACTGGACCTCCTTGTTCAGATGAGAGAGCGATTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGACGCGAAATAGATGAAGTGCAGAAAGCTGCTGTTGGAGGAGGAGTAGGTGGTGTACAGACATCGCGGATTGCATCTGAAGCCAACCGGGAATATATATTCTCATCATCTTTTACTGGTGACAAACAAGAACTTACCTCCACCAGATTAGAGAAAAATAAAGAAGATAAAAACCAAAAGTCACAAGGAACACATTCTTCACAGAATTTTACAAATAGCATTGCAGCAGGCAGTGATTCTAATAATTCAGGTGGATTGATTTCCAGTGAACCGGGTGAGCCTGTTGATGAAAGTATTCAGACATATCTAGATGAGAGGGGTCGATTTCGAGTTAGTAGATTGAGAGCTATGGGGATGCGTATGACCCGTGATATTCAAAGGAATTTGGATTTGATGAAGGAGATTGAGCAGGAAAGAACATTTGTCAACAAGGCAGCAATTATTGAAACTCTGCTAAATGCAGAGAATAATGGTCCATCAGAATGTTCTGGGAACCAGCATATAGGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAAAATGTGCAAAATGAGCAATCAAAGCTTGATGGGGATACTTCTATAGAGGTATCCTTTGAATATGATTGCAAGAATAAGCTTGTAAGTGGTGAGGATGATATATTTGCCAGTTTAGTAGGAGGAAATCCAGTGACACTCTTTTATGCTGATGACACTGCAGCAAAAGTGCAACCTTCTGGTTCTGATTCAGATTGTGGTTGGGAAGAAGGACCTGTTCAAGGCAGGAACACCATTTTTCCTGGACATAATAATATGGAATTGAAGTCTTCTGTTGCAGATGAAAATATTAATAATATTAATAATGAAAGTGAAATAGAATGGGAGGAAGGAGATTGTGATGGTGCTAAAAGCCCCTTAGTGTGTCCAGCTGAGTCAAGAAAATTGGCATCTCGAGGGCACTTGGAGGAGGAGTCTGATTTGCAAGAGGCAATAAGGAGAAGTCTTGAGAATACAGGGGATCAGAAACTTAAATGCATGTCAACCTTAGATGAGCATTCAAATTCTTATGAGAACAAATTAGACTCTGAATTAGAACGTGATGATAATCTGTATTGTTCTGGTCCAATGGATTTAAATGACAACAGTATGGGTGGTTCCACTTTGCCTTGGAAAGGTGGTACTGAACAAAATGAATTACATGAAATTGTAGATGGAGATAAAATACATGATTATGTGACTAAAAATAACCCACAGACTTTCCATTTGCGTGGAAGTCAGTCAAAGTCATCTGTGACATTTAATTCCAATAAAACAGAGATATTGATTGACAGACCTTACAGACTGGATATACGCACTTGTTCTGTAGATTCAATTTCAGATGCAAATGTCACAACGAAGGATGAGGTTCCAATGGTTGCAAAGCAATCGTTGTCCAAGGTTGATCCACTTGGCGTGACTGAAGAGGAGAAGAACTATATTAATGATTCTGAACTCTTGAGTAATTCTACTGACAATACAAAGCCTTCTATTCTTTTGATGGAGTCATCCTTGAAAGGATCTCCAGAAGGCCTTGGTATTGAGCCAAAATTTCCTTCAGTGGACAATGATGGAAATTTATCTGAGGAAAGGGATAGTAACCTTGCCAAAGATGCAGTGAACACCCCAGGAGATTTCCCTGCACAGTTAGCTGAGATTAGATTGGAGGATGAAATGCAAATTCTTGGTCGAGAATATATCAACCTGGAAAATGAACAGAGGAAGCTTGAGCGTAATGCAGAATCTGTTAACAGTGAATTATTCACAGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCTGAAGCACAGTGTGCTTACTTGGAACTTGCAAAACTGGTTGATGGTGTTGTTACTGATGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGAATGACCAGAGAAAAATTAGTTCGCATGGCACTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTGTAAATGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGCAGTGGGTTGAGTCACCAGATCCAACCATCCTAGGACGGTTGGATGCAAAAAATAGATCCAATACCAGAAAGAAAGGGTCAAAAGTTAAAGAAAAGATAAATACGTCAAATTGCATTATTGAAGAGTCTGTATCAGACGAGAACATCTCCCATACTCAGGAGCAAAAGGAGTTACCTGATTACATCCAAGAAATGAAGCAAACTTTCATGGACAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTCCTTCTTTTCCAAGTGAAGTAGTTATATCTGCTTACCATTCTCCACAAGTTGACAAGTCAACCGAGCCTTTCTCGTGGGGAAAGCCAGACCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAATTTGGGTGGACTAGCCAGAAAGCAGATGAGTTGCTATTACCTGTTTTAAAGGAATATAACAAACATGAGACTCAACTGCGGTTGGAAGCATTTTACAGTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCAGTAAGAGGAATTACTGGTAAGCAGAATTCAGATTTAATAGATGATTCTGCAGAAAACTTGTTCAAGAGTAGGAAGAACAAGAGAGGAAGTTCTGTTGAACCTGGGGATAACAAATTGGAGACTTCAGAAGGAACAGAGGAAAGTCTAGCAGGTAGGAAGAAATCAAAAACGGAAGAGTCAACTAAAAGGAAGAATGATGGGAATACTGTAGCTAAGGTACAGTCAAAGAAAAAGAAAATCAATGATGATCCTTCTTCAGCACCTGGTACATCTGAGGTGGAGAATTTACAGCCATGTGTGCAAACCAAAGAGCAATGTGATGGCAAGGCATTGGTTTGTAATAGAAGTGCCAGAGGCAGAGGCATAGGAGTAAAAAGAGGAAGGGAAAAGAAAATTCTCCGTTTTCAATCATGTGAAACTGAAACATCATCTAGTAGTACTGACATCGATGATCATGGGCCAAGAGTTCAAGTTGATATGTCAAAAGCTCCAGAAGTCGTGCGAAGGTCAATGCGATCTCGGAAACCTGTCAAATATTCTTTCCAGGACCTTGAAATTGAAGATGCTGTTGATTCATTTGATCAGAGCATTCAGACATGCTTGGGTGAAGATCCAGTAGATGAAAAATTATCCCACATTTATGGTGTATGTGGAGATGGTGTAACTGATTTCAGCAGAGGGAAAGAAAGCAGTATAATAAATCCTCCTCTAAAAGTGAACTTGCCTAGAGATTATCTTGAGTCAGAAGGTCGGTTTTGCATGGATGGTGGTGAAACTAGTCATCCAGGGACCGGCAATCGTGATAATTCTTTTGATTCTGACCCTTCTAATGTCTACCTTAAAATGGGAGGCGGATTCTGTTTAGATGATAGTGAGATAAGTAACGACCATAATGCAAGTGATGATATGAACACTGCTACAATGGATTATACTGCAGATATACCACAGAATTCTGATTTTTTGGATGAAACTGACTGTGTTAAAAACAGCTCAGATTTATTGTTTTCTAGTGTCGAAAAAGCTGGAAATGAGATACAAGATGGAGGGGCGTCTCCAAAAATCAATAAAGAGGCGAATGACAACCTTCCAAATGCTAGTAGTTATGATCATTCTGACATAGGGGTCTTGATACCAGAGAATGCTCGTCATGATAGTGGGACCTCCACCTCCACGGGGGCTTTTAGTGCTATGCCTTTTTTGAGGAAAAGAAGGAAGAACTGA 4098 0.3987 MSPFFLQPAMHGEFDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDEVQKAAVGGGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRLEKNKEDKNQKSQGTHSSQNFTNSIAAGSDSNNSGGLISSEPGEPVDESIQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMKEIEQERTFVNKAAIIETLLNAENNGPSECSGNQHIGKSQEVNVDLVGENVQNEQSKLDGDTSIEVSFEYDCKNKLVSGEDDIFASLVGGNPVTLFYADDTAAKVQPSGSDSDCGWEEGPVQGRNTIFPGHNNMELKSSVADENINNINNESEIEWEEGDCDGAKSPLVCPAESRKLASRGHLEEESDLQEAIRRSLENTGDQKLKCMSTLDEHSNSYENKLDSELERDDNLYCSGPMDLNDNSMGGSTLPWKGGTEQNELHEIVDGDKIHDYVTKNNPQTFHLRGSQSKSSVTFNSNKTEILIDRPYRLDIRTCSVDSISDANVTTKDEVPMVAKQSLSKVDPLGVTEEEKNYINDSELLSNSTDNTKPSILLMESSLKGSPEGLGIEPKFPSVDNDGNLSEERDSNLAKDAVNTPGDFPAQLAEIRLEDEMQILGREYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGMTREKLVRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTILGRLDAKNRSNTRKKGSKVKEKINTSNCIIEESVSDENISHTQEQKELPDYIQEMKQTFMDKHRNVSKNWHIPPSFPSEVVISAYHSPQVDKSTEPFSWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVRGITGKQNSDLIDDSAENLFKSRKNKRGSSVEPGDNKLETSEGTEESLAGRKKSKTEESTKRKNDGNTVAKVQSKKKKINDDPSSAPGTSEVENLQPCVQTKEQCDGKALVCNRSARGRGIGVKRGREKKILRFQSCETETSSSSTDIDDHGPRVQVDMSKAPEVVRRSMRSRKPVKYSFQDLEIEDAVDSFDQSIQTCLGEDPVDEKLSHIYGVCGDGVTDFSRGKESSIINPPLKVNLPRDYLESEGRFCMDGGETSHPGTGNRDNSFDSDPSNVYLKMGGGFCLDDSEISNDHNASDDMNTATMDYTADIPQNSDFLDETDCVKNSSDLLFSSVEKAGNEIQDGGASPKINKEANDNLPNASSYDHSDIGVLIPENARHDSGTSTSTGAFSAMPFLRKRRKN. 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02784 1365 CDD H3TH_XPG 744 888 - -
Seca2g02784 1365 MobiDBLite consensus disorder prediction 983 1042 - -
Seca2g02784 1365 Pfam XPG I-region 675 756 IPR006086 GO:0004518
Seca2g02784 1365 MobiDBLite consensus disorder prediction 1303 1326 - -
Seca2g02784 1365 MobiDBLite consensus disorder prediction 1339 1365 - -
Seca2g02784 1365 Coils Coil 628 662 - -
Seca2g02784 1365 CDD PIN_XPG_RAD2 658 739 - -
Seca2g02784 1365 Gene3D - 608 740 - -
Seca2g02784 1365 Gene3D - 741 796 - -
Seca2g02784 1365 MobiDBLite consensus disorder prediction 1096 1122 - -
Seca2g02784 1365 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 671 688 IPR006084 -
Seca2g02784 1365 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 746 761 IPR006084 -
Seca2g02784 1365 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 692 712 IPR006084 -
Seca2g02784 1365 SMART HhH_4 743 776 IPR008918 GO:0003677|GO:0003824
Seca2g02784 1365 MobiDBLite consensus disorder prediction 586 607 - -
Seca2g02784 1365 MobiDBLite consensus disorder prediction 983 1055 - -
Seca2g02784 1365 FunFam DNA repair protein UVH3 741 798 - -
Seca2g02784 1365 SUPERFAMILY PIN domain-like 645 756 IPR029060 -
Seca2g02784 1365 MobiDBLite consensus disorder prediction 132 158 - -
Seca2g02784 1365 FunFam DNA repair protein UVH3 621 740 - -
Seca2g02784 1365 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 7 1151 - -
Seca2g02784 1365 SMART xpgineu 672 741 IPR006086 GO:0004518
Seca2g02784 1365 ProSitePatterns XPG protein signature 2. 675 689 IPR019974 GO:0016788
Seca2g02784 1365 MobiDBLite consensus disorder prediction 114 164 - -
Seca2g02784 1365 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 741 950 IPR036279 -
Seca2g02784 1365 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02784 Seca-Chr2 80950564 80962201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02784 666 773 Core DNA Replication Machinery Family AT5G26680 35.135 1.09e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02784 K10846 - gmx:100820295 1877.06