Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02756 ATGCAAACTATAGGGTTGTGGCAGGGTAGATGGACTAAGCCACCTGGAGAAGCACTGCCGCCACTAAGCCACCTGGAGCACCACCGCGATATTCTGAGCGAAGCACGTTCTTCACGCCATGTTCCAGTAGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCAGTTGGAGCCACCTCTGTATGTTGTGCAGTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGGTTCGGACTCCCTGGCATCCTGGCAAGCAAACCTCTTCTTTGAGCCCACAAAATTTGAGAGCACAGATGTACTTGTTCACAGAGGAATTTATGAAGCTGCAAAAGGAATATATGAACAATTCTTGCCTGAAATAATGGACCATTTGAAAAGACATGGGGATCGTGCAAAGCTTCAATTCACTGGACACTCTCTTGGGGGTAGTCTCTCTCTCTTGATTCATTTGATGCTATTGACCAGAAAGGTTGTCAAACCCTCAAACCCTCGACCAGTAGTGACTTTTGGCTCACCATTTGTATTCTGTGGAGGCCAAAAAATAATCGATGAGCTAGGCCTGGATGAGAGTCAAATCCATTGTGTGATGATGCATAGAGATATTGTTCTCAGGGCCTTCTCTTGCAATTACCCTAACCAAGTAGCTGCAGTCCTTAAGCACTTAAGCAGCTCATTTCAGTCACATCCTTGTCTTATGAAAAATGTAACAGGGGAATCCAGAAGAAAAGACCAGTATCTGTGTTTTGCTGAAAACTATTGCGCCTGTTATTCTTTCTTCTATGATGTTGTCAACAGAGGAGAACAAAATTGTAAAGTAACATGTTGTCAACTCCCTCTGCTGCCTCAATCAATACAGACTTCAAAATGTGATGAGATGGGCAAAGCAAGTGGCAATGGCAATGGTGTTACTTCTGTTACGAACCAAAATTAA 948 0.4441 MQTIGLWQGRWTKPPGEALPPLSHLEHHRDILSEARSSRHVPVGAQSQLVCSGCRNLLVYPVGATSVCCAVAMQSQQCHLLGSDSLASWQANLFFEPTKFESTDVLVHRGIYEAAKGIYEQFLPEIMDHLKRHGDRAKLQFTGHSLGGSLSLLIHLMLLTRKVVKPSNPRPVVTFGSPFVFCGGQKIIDELGLDESQIHCVMMHRDIVLRAFSCNYPNQVAAVLKHLSSSFQSHPCLMKNVTGESRRKDQYLCFAENYCACYSFFYDVVNRGEQNCKVTCCQLPLLPQSIQTSKCDEMGKASGNGNGVTSVTNQN. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02756 315 SUPERFAMILY alpha/beta-Hydrolases 82 219 IPR029058 -
Seca2g02756 315 NCBIfam zinc finger domain, LSD1 subclass 48 71 IPR005735 -
Seca2g02756 315 CDD Lipase_3 82 208 - -
Seca2g02756 315 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 82 240 IPR043367 GO:0008970
Seca2g02756 315 Gene3D alpha/beta hydrolase 59 260 IPR029058 -
Seca2g02756 315 Pfam LSD1 zinc finger 51 71 IPR005735 -
Seca2g02756 315 Pfam Lipase (class 3) 82 214 IPR002921 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02756 Seca-Chr2 78884974 78890649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02756 82 240 Acyl Lipid Metabolism Gene Families AT3G61680 77.987 9.88e-87 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca2g02756 Lipase_3 4.3e-23 CL0028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02756 - - gmx:100790575 282.722