Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02739 ATGGAAAGAGATGTATGTGGTCTTTCCCCTGCATGGGATGTTGATAATGGTGATGAAAGTGTGAACTCCTCTAACTCAGTTTCACGAGGAGGAGACAAAATAGTTCAAAACAATAGCTCAACTAGAGACCCAGATGAGGGAAAGTTTGAGTGCCAATACTGTTTCAAGGAGTTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCTCACAAGAAAGAAAGAATGAGGAAGAAAAGATTGCAACTTCAAGCTAATAGGGCTAGCATAAACTACTACCTACCACCTTTTCAAAACGACCATGGTTCTGATACTCCTTGGTTCTATAATCCCTCTTCTTATAACTATGAGTTCACCTTATGTGAAGAATCTCAGATTAGCTTCAATTCAAATGTTCAAGATACCAACTTTTTTGTTGATGACAAATCTAGTTAG 435 0.3839 MERDVCGLSPAWDVDNGDESVNSSNSVSRGGDKIVQNNSSTRDPDEGKFECQYCFKEFANSQALGGHQNAHKKERMRKKRLQLQANRASINYYLPPFQNDHGSDTPWFYNPSSYNYEFTLCEESQISFNSNVQDTNFFVDDKSS. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02739 144 Gene3D Classic Zinc Finger 23 100 - -
Seca2g02739 144 FunFam zinc finger protein 5 23 102 - -
Seca2g02739 144 PANTHER ZINC FINGER PROTEIN 5 18 112 IPR044299 GO:0010090
Seca2g02739 144 SUPERFAMILY beta-beta-alpha zinc fingers 46 77 IPR036236 -
Seca2g02739 144 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Seca2g02739 144 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Seca2g02739 144 MobiDBLite consensus disorder prediction 1 46 - -
Seca2g02739 144 MobiDBLite consensus disorder prediction 16 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02739 Seca-Chr2 75429555 75430059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02739 35 108 C2H2 Transcription Factor Family AT1G67030 52.500 5.50e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g02739 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02739 - - gmx:100527006 176.022