Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02718 ATGGCATGGGCCCCAACATATGGTTTGAAAGGGATGATTGATGCTTCGGTCAGAGTAAAAGTTCAATCAAGAAAAGATGAACCAGAGGAAAAGATCATGCCGGTAGAGTTCAAAACTGGAAAAACTCCAAATAGCCAGTCATCCGTAGAACATAGTGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACTATTGATTCTGGTCTTCTGTATTATCTTCAATCAGATCAGACACAGGGCATTGTGGTTCAGAGATCTGATTTAGTTGGACTAATAATGCGACGTAATGAACTAGCAAGTGATATTCTTAAGGCATTAACCTTGCAACAACTGCCACCGATGATACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTCTGCAGCATTTATCAAAAGGCACATGGTGGAAGCATAGGGAGCAGTGGATTGGGAAGTTTGTTTGATTCTTATACCAGTCACCTGACTTCTGCTCATTCTAAGTTCCTTTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGAGACTGAGCTTTTAAAGAAAGAGGTGTGGCGATCACATAGTTTAAAAGCTCCAAACAATGGTGGCCTTTCATCTATTGTTCTTGATGCTTCACAAGGAATACCTCATCAGAAATCTCTCAAGGATAATCGTTTCATTTATCGTTTTGTACAAGAAGATTCTTCTTGCATCTCTGAGGTTTCTGAGGGTGATCCTTCTAGCGCCTCTTTGAAAGGTGACTTAAATCGCACACTTCGAAGTGGAGACCATGTGATATTGAGCAATGAATCTAGCCATCAAACTATTGCAAAAGGGGTGATCTCAGATATTAGCCAGACCCATGTTTCTGTTTCCTTTTCAAAGCGCTTAAGGATTCCTGGGAGATCATCCGCCACACATGATCTCCTTCAACAGGTTTGGAGAATTGACAAGGATGAATTTGTGGCTTCTTTTGCAATTATGAGGTTTAATCTTATTCAACTTTTTCTACAAAATGACCAAAGCGCTCATCTCCTTAGGATGATAGTTGACCTTGAGGCTCCTAAATTTGACAGTGGATCTATAGCCAGTCAGGATCCAGCAATCTCCTATGTTTGGTCAGAGAAGAGTTTGAATAATGATCAACGTAGAGCGATTCTGAAGATACTTACGGCAAAAGATTATGCGCTTATATTAGGAATGCCTGGAACAGGAAAGACGTCCACATTGGTCCATGCTGTGAAAGCTTTATTGATTAGAGGCACATCCATTTTGCTAACAGCCTATACAAATTCTGCTGTTGATAATTTACTCATAAAATTAAAAGCACAGGGCATTGATTTTGTACGTATTGGAAGATATGAAGCAGTGAATGAAGAGGTCAGGGGGCACTGCCTCTCAGCAATGAATGTACCAAGAGTTGAAGATATCAAAATGAGGTTAGAACAAGTCAAAGTTGTCGCAGTTACTTGTCTTGGCATTTCTAGTCCCTTGCTTACCAACATGAGATTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGCCCTCTAACTTTTGCTTCGATGTTTGTTCTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAGAGTACAGAGGCTCGGGAGAATGGCATGGGGATTAGTTTGTTTTGTAGGTTGTCAGAAGCACATCCACAGGCAATATCAGCTTTGCAGAGTCAGTATCGTATGAGTCAGGGCATTATGGATCTGTCAAATGCCTTGATATATGGTGATAGATTGAGGTGTGGTTCATCTGTGATAGCTAATGCAAAACTTGAATTTGCTGGCTTAAACTGTGGTTTGCCCTGGCTAGAAGATGTTTTGAATCCAGGAAGGCCGGTGATATTTATTGATACTGACATGTTGCCTGCTTTAGAGACAAGAGATCAGAAGATTGTGAATAACCCTATTGAAGCTCACATAATTGCTGAGGTTGCAAAGGAATTGGTAAAAAATGGAATTGAAGGAGAACACATTGGCATTATTACTCCCTATAATTCACAGGCAAACCTCATCCGGCAAGCTGCTTGCATAACTTCTTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAGGATTGTATATTAGTTTCTTTTGTAAGGTCTTGTGAAAACTCAACGAGTTGCGTTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAGAAAGTTGATCATGGTGGGGTCTTGTAGAACTCTAATGAAGGTTCCATTACTGAAGCTTCTCATTAAGAAGGTTGAGGAGCAATGTGGAATTTTAAGTGTGTCTAAGAAGGATATCTATGGGAAGGGTGAGCTCAAGCGATGTTCTCAAATGAGATGA 2397 0.4088 MAWAPTYGLKGMIDASVRVKVQSRKDEPEEKIMPVEFKTGKTPNSQSSVEHSAQVILYTLLMSERYQKTIDSGLLYYLQSDQTQGIVVQRSDLVGLIMRRNELASDILKALTLQQLPPMIQSPSICRGCRHLNVCSIYQKAHGGSIGSSGLGSLFDSYTSHLTSAHSKFLCHWDHLIDLEAKETELLKKEVWRSHSLKAPNNGGLSSIVLDASQGIPHQKSLKDNRFIYRFVQEDSSCISEVSEGDPSSASLKGDLNRTLRSGDHVILSNESSHQTIAKGVISDISQTHVSVSFSKRLRIPGRSSATHDLLQQVWRIDKDEFVASFAIMRFNLIQLFLQNDQSAHLLRMIVDLEAPKFDSGSIASQDPAISYVWSEKSLNNDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRYEAVNEEVRGHCLSAMNVPRVEDIKMRLEQVKVVAVTCLGISSPLLTNMRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPLVQSTEARENGMGISLFCRLSEAHPQAISALQSQYRMSQGIMDLSNALIYGDRLRCGSSVIANAKLEFAGLNCGLPWLEDVLNPGRPVIFIDTDMLPALETRDQKIVNNPIEAHIIAEVAKELVKNGIEGEHIGIITPYNSQANLIRQAACITSLEIHTIDKYQGRDKDCILVSFVRSCENSTSCVASLLGDWHRINVALTRAKRKLIMVGSCRTLMKVPLLKLLIKKVEEQCGILSVSKKDIYGKGELKRCSQMR. 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02718 798 Gene3D - 321 470 IPR027417 -
Seca2g02718 798 Gene3D - 476 576 IPR027417 -
Seca2g02718 798 Gene3D - 256 320 - -
Seca2g02718 798 Pfam Domain of unknown function DUF83 28 136 IPR022765 -
Seca2g02718 798 Gene3D - 2 136 IPR011604 -
Seca2g02718 798 FunFam DNA replication helicase 577 789 - -
Seca2g02718 798 CDD SF1_C_Upf1 583 772 IPR047187 -
Seca2g02718 798 Pfam AAA domain 379 470 IPR041677 GO:0004386
Seca2g02718 798 Pfam AAA domain 479 546 IPR041677 GO:0004386
Seca2g02718 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 763 IPR027417 -
Seca2g02718 798 Gene3D - 577 784 IPR027417 -
Seca2g02718 798 Pfam AAA domain 556 755 IPR041679 -
Seca2g02718 798 CDD DEXXQc_DNA2 378 578 IPR026851 GO:0017116
Seca2g02718 798 PANTHER DNA2/NAM7 HELICASE FAMILY 229 771 IPR045055 -
Seca2g02718 798 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 475 576 - -
Seca2g02718 798 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 321 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02718 Seca-Chr2 74838439 74865927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02718 1 520 Core DNA Replication Machinery Family AT1G08840 67.300 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02718 K10742 - gmx:100799415 1310.05