Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02712 ATGTCTTGTGCCACCGCTTTGCTTCTCCTCCTGGCCATGATCTCCTCTTCCTCTTGCTACAACGAAATGGAGGTTCTGCAGATGGCCCAAATCCAGGTCTCACAAGCCAAGAGTTGGGCTGATCACTCTGTGAGATTGCATGGCCATTTCGATCAAACAATAAGTGATTGTGCCAAGCTCTATGAAGAGAGTGAGTCTAGGCTTTCTCACATGATGGCTGACCAGAGTGCTTATACCACACAAGATGCACTTATATGGATAAGTGCTGTTATGACAAACCACAGGACTTGCTTGGATGGCTTGCAGGAAAAAGGGTATCTCCAACCTCAGGTTTTGGGTAAAAACTTGACCACGCTGCTTACGAAAGCCCTAGTTTCGTATGCAAATTTAAATAATGAAGACAAAGCCAAAGAGCCACCTAAGAAAACGACGACATCGGAATCATCAGATAGCGGTCTTCTAGCATCATGGAGTAGTGTAACTTCTAATGCAGACTTCACAGTGGCACAGGACGGTTCAGGTTCCCACAAAACAATCACTGAAGCCGTAAATGCGCTCGATCATGATCGTCCTACAAGACAAGTTATTTACGTTAAATCAGGAGTCTACAATGAGAAAGTGGAAATTGGAGGCAAGTTGAAGAATGTGATGTTTGTAGGAGATGGAATAGACAAAACTATTGTCACTGGCAACAGAAATGTCATTCAGGGTTATTCAACTATGAGCTCAGCTACATTTGATGTATCTGGAGATGGGTTTTGGGCAAGAGATATGACGTTCGAGAACACAGCAGGCCCTGATGGCCACCAAGCAGTGGCACTAAAGGTCAGTTCAGACCAATCAGTCTTCTATAGATGCAGCTTCAAAGGATACCAAGATACTCTTCTTGTCCATTCAAATAGGCAATTTTTCCGTGATTGTCACATATATGGAACCATTGATTTCATATTTGGGGATGCCTCAGTGGTCTTCCAAAATTGTCAAATCTTTATAAGGAGACCAAAGGACTACCAAGCCAACTTCATCACAGCACAAGGGAGAGATAATGCCGATAAACCCACTGGGATTTCAATCCAGAGTTGTCAGGTTAAGCCTGCACCTGATTTTGACACTTCAAAGGACCCAATGATCAAGAGCTACTTAGGAAGGCCTTGGAAACAGTATTCAAGGACTGTGTTTCTGAAGACAGATTTAGATGGGATGATTGATCCAAAGGGATGGGGTGAATGGGATGGAGACTTTGCACTTTCAACTCTGTACTATGGAGAGTATATGAACACTGGAAGTGGTGCCTCTACACAGAATAGGGTGAATTGGCCTGGTTTCCATGTGCTGAATACTGCTGATGAGGCTACACCATTCACCGTCACTCAGCTTTTGCAAGGAGAACAGTGGATTCTAGCTACAGGTGTGGAATTCTGGTCTGGAATTTAA 1434 0.4386 MSCATALLLLLAMISSSSCYNEMEVLQMAQIQVSQAKSWADHSVRLHGHFDQTISDCAKLYEESESRLSHMMADQSAYTTQDALIWISAVMTNHRTCLDGLQEKGYLQPQVLGKNLTTLLTKALVSYANLNNEDKAKEPPKKTTTSESSDSGLLASWSSVTSNADFTVAQDGSGSHKTITEAVNALDHDRPTRQVIYVKSGVYNEKVEIGGKLKNVMFVGDGIDKTIVTGNRNVIQGYSTMSSATFDVSGDGFWARDMTFENTAGPDGHQAVALKVSSDQSVFYRCSFKGYQDTLLVHSNRQFFRDCHIYGTIDFIFGDASVVFQNCQIFIRRPKDYQANFITAQGRDNADKPTGISIQSCQVKPAPDFDTSKDPMIKSYLGRPWKQYSRTVFLKTDLDGMIDPKGWGEWDGDFALSTLYYGEYMNTGSGASTQNRVNWPGFHVLNTADEATPFTVTQLLQGEQWILATGVEFWSGI. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02712 477 MobiDBLite consensus disorder prediction 134 153 - -
Seca2g02712 477 ProSitePatterns Pectinesterase signature 2. 309 318 IPR033131 -
Seca2g02712 477 Gene3D Invertase/pectin methylesterase inhibitor family protein 15 130 IPR035513 -
Seca2g02712 477 Gene3D - 159 477 IPR012334 -
Seca2g02712 477 Pfam Plant invertase/pectin methylesterase inhibitor 35 113 IPR006501 GO:0004857
Seca2g02712 477 Pfam Pectinesterase 165 463 IPR000070 GO:0030599|GO:0042545
Seca2g02712 477 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 117 IPR035513 -
Seca2g02712 477 CDD PMEI-like_4 28 128 - -
Seca2g02712 477 PANTHER PECTINESTERASE 24 466 - -
Seca2g02712 477 SMART PMEI_2 9 126 IPR006501 GO:0004857
Seca2g02712 477 SUPERFAMILY Pectin lyase-like 160 476 IPR011050 -
Seca2g02712 477 FunFam Pectinesterase 159 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02712 Seca-Chr2 74063737 74067103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02712 7 477 Carbohydrate Esterase AT3G60730 51.779 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02712 K01051 - gmx:100810741 719.924