Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02688 ATGGATTCAAATTCCCGTTATCAACTACAACAGCAACAAATCAATTGTGGTTCATTTCCCTTTCGGTCTGTTAAACAAACAGGTGAAGGTCAAGGTGGTGCTAATAACCCCTGGGTTATGGATTCTGAACCAGAGAGGTTAGTTTTGAGATTCATGAATTCCGGTAATAGCAACAACGATTCGCCTTCGCCTAGTTTGCGAGAATTCATGGACAAGCCTTTAGCCAACGAGTCATCATCATCGGTTCTGAGCCTCATCAATTGCCAGCAGAGTTATACTACTTCTTCTTCTGCTGGTCTTTTCTCCTTTCAGAACGGGTATGATTCTATGAAAGGTTTTGGAGATTACAGTGGTGTGAATGAAATTGATGGTGAACTTAGTCTATCTATGAACCAAATTAGTTTCTCATCAAGAAGTCCTTCATCCTTGGGAATGTTATCACAGGTCTCCAAAATGGGGAATGAGGTAATAACTCATGAGAGGAGACAGGGAAGTGGCAAGGGCGATGCTGGATATTATTATAGTCCTGGATTCCCTTACGGTTCTTGTAAGGAGATATCACACCACTCAGATAAACTCATAGGCAAGAAAAGAGAGCAAAATCGTAATCATAAGTTATTTTTTGATCCTCAGAATGGAGAAGTAGCAAACCAAGTTTATACACTATCGAATCACTTGAGTCTGCCAAGCACTTCATCCGAGATGTTTTCTGTGGAGAATATGGTTCAGTTCCAAGAAGAGATTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTCGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTCGGATCAATGAACGAATGAGGAAATTGCAAGAACACGTTCCAAACATGGACAAGCAAACTAGCACAGCAGACATGTTGGACTTGGCTATAGAGTACATCAAAGATCTTCAGAACGAATTCAAGACTCTGAATGAAAAACGAGATAAATGCAAATGTATAAGGAAGTCACAAACAAATCAAATTGCTTGA 1008 0.4048 MDSNSRYQLQQQQINCGSFPFRSVKQTGEGQGGANNPWVMDSEPERLVLRFMNSGNSNNDSPSPSLREFMDKPLANESSSSVLSLINCQQSYTTSSSAGLFSFQNGYDSMKGFGDYSGVNEIDGELSLSMNQISFSSRSPSSLGMLSQVSKMGNEVITHERRQGSGKGDAGYYYSPGFPYGSCKEISHHSDKLIGKKREQNRNHKLFFDPQNGEVANQVYTLSNHLSLPSTSSEMFSVENMVQFQEEIVPCKIRAKRGFATHPRSIAERVRRTRINERMRKLQEHVPNMDKQTSTADMLDLAIEYIKDLQNEFKTLNEKRDKCKCIRKSQTNQIA. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02688 335 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 325 - -
Seca2g02688 335 FunFam Transcription factor bHLH130 family 260 329 - -
Seca2g02688 335 Coils Coil 299 326 - -
Seca2g02688 335 Gene3D - 261 332 IPR036638 GO:0046983
Seca2g02688 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 309 IPR011598 GO:0046983
Seca2g02688 335 Pfam Helix-loop-helix DNA-binding domain 265 310 IPR011598 GO:0046983
Seca2g02688 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 323 IPR036638 GO:0046983
Seca2g02688 335 SMART finulus 265 315 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02688 Seca-Chr2 72921682 72925100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02688 94 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 50.877 3.80e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g02688 HLH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02688 - - gmx:100796534 325.865