LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g02676	ATGGAAAACTCTAATGATGTTGTGATTGGTAATTTAGATGATGATATAGAGACTTATTGTGTCGTTAGTTCTGATGATAGTGCAAGTGATGAGGCTCATAATGATAATGATTCTGATAGTGTTAGTGACAGTGATAGTCAGAGAGGTAGTGAGACTGAGAATGATATACCCAGTAATAGTGAACATAAAGCCAGAGGAAATGAGTCATCTTTAATTGATGTTGGTGGTGAAAAATTTAAAAGAATAGATGAACTGACTAAGGAAAATGTTATGGGGCTAGATTTTGGTAGTGAAAAAGAAGCTGGTGATTTTTATGAGACGCATTCTAAGAGTTATGGTTTTGCTGTAAGGAAAGATGATGTAAAGAAGGATGCTAGGGGCCAGGTTCGAATGCGCCAATTTGTTTGCAACAAGGAGGGTGTAAGGAACAAAAAACATTTGATGTGGGTTGATAGAAAAAGGGAACATAGACCATTGACTCGTACATCATGTCTTGCTAAACTTCGTGTGCACTACAATCTTAGGACAAATAGATGGAAAGTGGTCTCATTTGTGCAGAATCATAACCACGAACTATGCCCATCAAAATTTAGGCACCTGATCAGCACACATCGCTTTATTCCAGATGCAGACAAAGCTCAAATTGATAGCTTGCATGCACATGGTGTAAGAACCTGCCACATAATGGGTTATTTGGATGAAGATGAAACACTGAATGAAGGAGCGCAGGATGGTGACAATGTTCAACCAAGAGTGATTATAAGCCAAAATGTCAAAGTGAAGAAAGGTAAGGATAAAGTTGAGGATTATTCAAAAAGGATGAAAACAAAAGTAAAAGTCGCGACGCAGGAATCAGAGACTGATAACGAAGATACGTTGGATGGAGGGTTTCAGGATGGTGAAAATTTTCACCCCCAAGACATTGGAAGCCAAAATGTCAAAGTAAAAAAAGCGAAGAATAATATTGAGGATTCTTCTAAAATGAAGAAAACAAAAGTAAAAGGTACCTCACATGAATCAGATAAGAAATGTAAGATTGGTGGGTGTTCTAGCGGCGCAAAGGCGGTAGTATCTCAAGAGCAAAGTACGTTACCTAAAGTTCATATTCCCCAATGTGGCCAAGGGGCCACCATGAATTGTAATGTTGGTGTTGTTCCAGTGTACCCTCAAAATTCCAATGTTCCTTTTTTTCATCCTAATACTCAAATGCCTATTTACCCGCCTAATACCCATGGTAGTGTATACCCCCTTACTACCCAAGTTCCCTTTTATCCTCAAAATGGCCAACTTCCTATTTACCCTCAGAATCCAAATATTCCTTGTGTCAACCAAGTTCCTCAGTATTTTCCTGGTATGCCAAATGTTAACAATGCCACATCCATTTCTAATTTGCTTCAACAAGTTATGAAGAAAGGTGGACAGAGCAGTAACGGTGAGTATCAGGATTCAGTTATTTTGCATACTCTATTTTAG	1473	0.3842	MENSNDVVIGNLDDDIETYCVVSSDDSASDEAHNDNDSDSVSDSDSQRGSETENDIPSNSEHKARGNESSLIDVGGEKFKRIDELTKENVMGLDFGSEKEAGDFYETHSKSYGFAVRKDDVKKDARGQVRMRQFVCNKEGVRNKKHLMWVDRKREHRPLTRTSCLAKLRVHYNLRTNRWKVVSFVQNHNHELCPSKFRHLISTHRFIPDADKAQIDSLHAHGVRTCHIMGYLDEDETLNEGAQDGDNVQPRVIISQNVKVKKGKDKVEDYSKRMKTKVKVATQESETDNEDTLDGGFQDGENFHPQDIGSQNVKVKKAKNNIEDSSKMKKTKVKGTSHESDKKCKIGGCSSGAKAVVSQEQSTLPKVHIPQCGQGATMNCNVGVVPVYPQNSNVPFFHPNTQMPIYPPNTHGSVYPLTTQVPFYPQNGQLPIYPQNPNIPCVNQVPQYFPGMPNVNNATSISNLLQQVMKKGGQSSNGEYQDSVILHTLF.	491

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g02676	490	MobiDBLite	consensus disorder prediction	20	72	-	-
	Seca2g02676	490	Pfam	FAR1 DNA-binding domain	103	193	IPR004330	-
	Seca2g02676	490	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	23	233	-	-
	Seca2g02676	490	MobiDBLite	consensus disorder prediction	28	72	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g02676	Seca-Chr2	72490601	72496530	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca2g02676		FAR1	5e-20	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g02676	-		-	ccaj:109792835	205.297