Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02662 ATGGAGAAGCATAAGTGTAAGCTCTGCTATAGAAGCTTCTCGAATGGGAGAGCTTTAGGGGGTCACATGAGATCTCATATGATGAACCTTTCTCTTGCAAAGCCAGAAGAAGAGTCATCACGAACCCAACTCAGTTTTGAAGCTGAATCAGCTCCATCATCATCATCAGAAGATGAAGGTGGTGATGATGAAAAGGGTCTCTCTTATGGTCTGAGAGAGAATCCAAAGAGAAGCATTCGCCTTGTAGATCCTGAGTTTTCTTTTGTAGCTGCAGACACTGGTGGGTCTGTGATTCTTCAAGAGGACAGAGAAAGCGAAACAGAGTCATCAAAGAACAACCCAACTCGTAGAAGATCCAAAAGGGCATGGAAACTAGGTGGGTTCGATTACAAGCACTATCATTACAATTACAACAACAATAAGCATGTTGAAATGAAGAAGGTAAAGTTCTGCAAAACTAATAACAACAACACAGAATCATGGGTCGATCACGAACCTGCAAGTTCGGTTTCTGATGCAACAACCGAAGAAGACGTTGCATTTTGTCTCATGATGCTGTCTAGGGACAAATGGAAGAGACACAAGGATCAGCAACAACGATTGGTGGATGATCAATATGAAGAGGAAGAGGAAGAAGAAGAGGATGATGAAGAAGAAGAAGAAGGGGAAGATGAAGATGAAGGTGAGAGATCCTTGGATGATAGTGATGAATCCCAAGAACTGATGAAAATGTCCAAGAACCGTGTAAGAAAAGGAAGGTACAAATGTGAGACCTGCAACAAAGTGTTTCGATCTTATCAAGCATTGGGTGGTCACAGAGCGAGTCACAAGAAGATCAGAGCCAACGTAACAGTGGTGGAAGAACCAGAATCTGAGCGTGGGAATTGTGGAACTTTTGCCCCTATGGTGGTGGAAAAGAAAATCCATGAGTGCCCAGTTTGTTACAGAGTCTTTGCTTCAGGTCAAGCACTTGGTGGACACAAGAGAACCCATGTTACTGGGTCCACAACAATCCAAGTTCCATGTTCCTCAAAGTTTGGAAACAGTTTAATAGATCTTAACCTCCCTGCTCCAATTGAGGATGATGACATTAGCCAGATAGAGAACTCTGCTGTTTCAGATGCAGAATTTCTCAAAACCCGTTAG 1146 0.4284 MEKHKCKLCYRSFSNGRALGGHMRSHMMNLSLAKPEEESSRTQLSFEAESAPSSSSEDEGGDDEKGLSYGLRENPKRSIRLVDPEFSFVAADTGGSVILQEDRESETESSKNNPTRRRSKRAWKLGGFDYKHYHYNYNNNKHVEMKKVKFCKTNNNNTESWVDHEPASSVSDATTEEDVAFCLMMLSRDKWKRHKDQQQRLVDDQYEEEEEEEEDDEEEEEGEDEDEGERSLDDSDESQELMKMSKNRVRKGRYKCETCNKVFRSYQALGGHRASHKKIRANVTVVEEPESERGNCGTFAPMVVEKKIHECPVCYRVFASGQALGGHKRTHVTGSTTIQVPCSSKFGNSLIDLNLPAPIEDDDISQIENSAVSDAEFLKTR. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02662 381 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 379 IPR044303 GO:0006355
Seca2g02662 381 SUPERFAMILY beta-beta-alpha zinc fingers 253 331 IPR036236 -
Seca2g02662 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 309 336 IPR013087 -
Seca2g02662 381 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Seca2g02662 381 MobiDBLite consensus disorder prediction 35 55 - -
Seca2g02662 381 Pfam C2H2-type zinc finger 4 27 - -
Seca2g02662 381 Pfam C2H2-type zinc finger 309 331 - -
Seca2g02662 381 Pfam C2H2-type zinc finger 253 278 - -
Seca2g02662 381 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Seca2g02662 381 SUPERFAMILY beta-beta-alpha zinc fingers 3 28 IPR036236 -
Seca2g02662 381 MobiDBLite consensus disorder prediction 33 71 - -
Seca2g02662 381 MobiDBLite consensus disorder prediction 193 246 - -
Seca2g02662 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Seca2g02662 381 SMART c2h2final6 4 26 IPR013087 -
Seca2g02662 381 SMART c2h2final6 309 331 IPR013087 -
Seca2g02662 381 SMART c2h2final6 254 276 IPR013087 -
Seca2g02662 381 MobiDBLite consensus disorder prediction 99 115 - -
Seca2g02662 381 Coils Coil 195 227 - -
Seca2g02662 381 ProSitePatterns Zinc finger C2H2 type domain signature. 311 331 IPR013087 -
Seca2g02662 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Seca2g02662 381 Gene3D Classic Zinc Finger 251 331 - -
Seca2g02662 381 MobiDBLite consensus disorder prediction 97 119 - -
Seca2g02662 381 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02662 Seca-Chr2 71892530 71893675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02662 1 367 C2H2 Transcription Factor Family AT3G60580 43.200 2.52e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g02662 zf-C2H2_6 4.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02662 - - vra:106780254 441.425