Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g02636 | ATGAGTCAGTGTGTTCCCAGCTGGGATGTCGACGACAACAACACACCACCCCCCAGACTCTCTCTTCGTTCCAACTCCAATTCAACTGCCCCTGATGTCCCCATGCTAGACTATGATATTGCAGAACTGACATGGGAAAATGGACAACTTTCCATGCATGGCTTAGGGCTACCGCGAGTGCCGGTAAAACCCGCCACCACTACTACTCCTTCCAATAAGGATACATGGGAAAAGCCTCGTGCAAGTGGCACCTTAGAGTCTATTGTAAACCAAGCCACTAGCTTACCCCACCACCGGAGCAAATCATCATCTTTTGTTGCCGCCGGTGGTGGTGTGTATGGGAACGTGTTAGTCCCATGGCTGGACCCTCACCGTGCTGCGGCTATCGCCGCCGCGGCAGCTTCGAACACGGTGACGATGGATGCGTTGGTGCCGTGTTCGAATCGGACGGAGGAGCAGAGTACGCAGGTCATGGATTCCATCCCAGGAGGACTTGGCACGTGCATGGTAGGTTGTTCCACACGTGTGGGGTCTTGTAGCGGTACTGCTACGCAGCAGGAGGAAGGGGCGTTACTTGCGGAGGCGGCAAAGCGTGCGAGGGTGCCAAACGTGCCGGTGAGTAGCAAGGATCAGAGTGTGAGTGGAAGCAGGCACGTGACACTTGACACGTGTGACAGAGAATTTGGTGTGGGTTTCACTTCCACCTCCATAGGGTCGTTGGAAAATACAAGCTCAGCAAAGCAGTGCACTAAGACCACCACTGTTGATGACCACGATTCTGTTTGCCATAGTAGACCAATGAGAGATGATGGGGAGGAGGAGGAGAAAAAGAGGGGAAATCGAAAATCTTCTGTGTCTACTAAAAGGAGCAGAGCTGCAGCAATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAGAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTGAAACAGTTGCAAGCACAAGTGCAGATGATGAATAGAATCAACATGTCATCCATGATGCTGCCAATGACCATGCAACAACAACTTCAAATGTCGATGATGGCTCCAATGGGCATGGGGATGGGGATGGGTATGGGGATGGGAATGGGGATGGGGATGGATATGAACACTATGAATAGAGCTAATATCCCTGGCATGCCTCCGGTCCTCCACCCTTCTGCCTTCATGCCTATGGCCTCGTGGGATGGCGCCAGCGGTGACCGGCTTCAAGGGCCTCCGGCCAACGTGATGGCTGACCCTCTCTCCACATTTTTTGGATGCCAATCACAGCCCATGACCATGGATGCCTACAGTAGGATTGCTGCCATGTATCAGCAGCTCCACCAGCCTCCACCTTCTGGTTCTAAGAGTTGA | 1422 | 0.5162 | MSQCVPSWDVDDNNTPPPRLSLRSNSNSTAPDVPMLDYDIAELTWENGQLSMHGLGLPRVPVKPATTTTPSNKDTWEKPRASGTLESIVNQATSLPHHRSKSSSFVAAGGGVYGNVLVPWLDPHRAAAIAAAAASNTVTMDALVPCSNRTEEQSTQVMDSIPGGLGTCMVGCSTRVGSCSGTATQQEEGALLAEAAKRARVPNVPVSSKDQSVSGSRHVTLDTCDREFGVGFTSTSIGSLENTSSAKQCTKTTTVDDHDSVCHSRPMRDDGEEEEKKRGNRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPMTMQQQLQMSMMAPMGMGMGMGMGMGMGMGMDMNTMNRANIPGMPPVLHPSAFMPMASWDGASGDRLQGPPANVMADPLSTFFGCQSQPMTMDAYSRIAAMYQQLHQPPPSGSKS. | 474 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g02636 | 473 | MobiDBLite | consensus disorder prediction | 236 | 251 | - | - | |
Seca2g02636 | 473 | SMART | finulus | 297 | 346 | IPR011598 | GO:0046983 | |
Seca2g02636 | 473 | Gene3D | - | 286 | 352 | IPR036638 | GO:0046983 | |
Seca2g02636 | 473 | FunFam | transcription factor UNE10 isoform X1 | 286 | 351 | - | - | |
Seca2g02636 | 473 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 291 | 340 | IPR011598 | GO:0046983 | |
Seca2g02636 | 473 | MobiDBLite | consensus disorder prediction | 236 | 306 | - | - | |
Seca2g02636 | 473 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 289 | 353 | IPR036638 | GO:0046983 | |
Seca2g02636 | 473 | Pfam | Helix-loop-helix DNA-binding domain | 296 | 341 | IPR011598 | GO:0046983 | |
Seca2g02636 | 473 | CDD | bHLH_AtPIF_like | 291 | 352 | IPR047265 | - | |
Seca2g02636 | 473 | MobiDBLite | consensus disorder prediction | 252 | 281 | - | - | |
Seca2g02636 | 473 | Coils | Coil | 297 | 317 | - | - | |
Seca2g02636 | 473 | PANTHER | TRANSCRIPTION FACTOR PIF1-RELATED | 41 | 470 | IPR031066 | - | |
Seca2g02636 | 473 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Seca2g02636 | 473 | MobiDBLite | consensus disorder prediction | 64 | 78 | - | - | |
Seca2g02636 | 473 | MobiDBLite | consensus disorder prediction | 58 | 78 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g02636 | Seca-Chr2 | 70023240 | 70029539 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g02636 | 1 | 454 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G00050 | 49.351 | 7.11e-106 | 318 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Seca2g02636 | HLH | 7.3e-14 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g02636 | - | - | gmx:100798775 | 629.787 |