Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02633 ATGAGTCAGTGTGTTCCCAGCTGGGATGTCGACGACAACAACACACCACCCCCCAGACTCTCTCTTCGTTCCAACTCCAATTCAACTGCCCCTGATGTCCCCATGCTAGACTATGATATTGCAGAACTGACATGGGAAAATGGACAACTTTCCATGCATGGCTTAGGGCTACCGCGAGTGCCGGTAAAACCCGCCACCACTACTACTCCTTCCAATAAGGATACATGGGAAAAGCCTCGTGCAAGTGGCACCTTAGAGTCTATTGTAAACCAAGCCACTAGCTTACCCCACCACCGGAGCAAATCATCATCTTTTGTTGCCGCCGGTGGTGGTGTGTATGGGAACGTGTTAGTCCCATGGCTGGACCCTCACCGTGCTGCGGCTATCGCCGCCGCGGCAGCTTCGAACACGGTGACGATGGATGCGTTGGTGCCGTGTTCGAATCGGACGGAGGAGCAGAGTACGCAGGTCATGGATTCCATCCCAGGAGGACTTGGCACGTGCATGGTAGGTTGTTCCACACGTGTGGGGTCTTGTAGCGGTACTGCTACGCAGCAGGAGGAAGGGGCGTTACTTGCGGAGGCGGCAAAGCGTGCGAGGGTGCCAAACGTGCCGGTGAGTAGCAAGGATCAGAGTGTGAGTGGAAGCAGGCACGTGACACTTGACACGTGTGACAGAGAATTTGGTGTGGGTTTCACTTCCACCTCCATAGGGTCGTTGGAAAATACAAGCTCAGCAAAGCAGTGCACTAAGACCACCACTGTTGATGACCACGATTCTGTTTGCCATAGTAGACCAATGAGAGATGATGGGGAGGAGGAGGAGAAAAAGAGGGGAAATCGAAAATCTTCTGTGTCTACTAAAAGGAGCAGAGCTGCAGCAATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAGAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTGAAACAGTTGCAAGCACAAGTGCAGATGATGAATAGAATCAACATGTCATCCATGATGCTGCCAATGACCATGCAACAACAACTTCAAATGTCGATGATGGCTCCAATGGGCATGGGGATGGGGATGGGTATGGGGATGGGAATGGGGATGGGGATGGATATGAACACTATGAATAGAGCTAATATCCCTGGCATGCCTCCGGTCCTCCACCCTTCTGCCTTCATGCCTATGGCCTCGTGGGATGGCGCCAGCGGTGACCGGCTTCAAGGGCCTCCGGCCAACGTGATGGCTGACCCTCTCTCCACATTTTTTGGATGCCAATCACAGGTCAGTAAATAA 1350 0.5133 MSQCVPSWDVDDNNTPPPRLSLRSNSNSTAPDVPMLDYDIAELTWENGQLSMHGLGLPRVPVKPATTTTPSNKDTWEKPRASGTLESIVNQATSLPHHRSKSSSFVAAGGGVYGNVLVPWLDPHRAAAIAAAAASNTVTMDALVPCSNRTEEQSTQVMDSIPGGLGTCMVGCSTRVGSCSGTATQQEEGALLAEAAKRARVPNVPVSSKDQSVSGSRHVTLDTCDREFGVGFTSTSIGSLENTSSAKQCTKTTTVDDHDSVCHSRPMRDDGEEEEKKRGNRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPMTMQQQLQMSMMAPMGMGMGMGMGMGMGMGMDMNTMNRANIPGMPPVLHPSAFMPMASWDGASGDRLQGPPANVMADPLSTFFGCQSQVSK. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02633 449 MobiDBLite consensus disorder prediction 236 251 - -
Seca2g02633 449 SMART finulus 297 346 IPR011598 GO:0046983
Seca2g02633 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Seca2g02633 449 Pfam Helix-loop-helix DNA-binding domain 296 341 IPR011598 GO:0046983
Seca2g02633 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 353 IPR036638 GO:0046983
Seca2g02633 449 CDD bHLH_AtPIF_like 291 352 IPR047265 -
Seca2g02633 449 Gene3D - 286 352 IPR036638 GO:0046983
Seca2g02633 449 MobiDBLite consensus disorder prediction 252 281 - -
Seca2g02633 449 MobiDBLite consensus disorder prediction 236 307 - -
Seca2g02633 449 Coils Coil 297 317 - -
Seca2g02633 449 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 444 IPR031066 -
Seca2g02633 449 MobiDBLite consensus disorder prediction 1 28 - -
Seca2g02633 449 MobiDBLite consensus disorder prediction 64 78 - -
Seca2g02633 449 MobiDBLite consensus disorder prediction 58 78 - -
Seca2g02633 449 FunFam transcription factor UNE10 isoform X1 286 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02633 Seca-Chr2 70002202 70006295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02633 1 447 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.110 1.07e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g02633 HLH 6.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02633 - - gmx:100798775 582.793