Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02619 ATGTTGGAGTACGAATGGGGTAATCCATCGACCATAACCCTCACCGGAAATGAAGGCGGCGCCGCCACAGAATCCGGCCAAACCCACCGACAAACCCTCAATCACAACTACAACTTGTTACCTAACCACCTGCTATCTCAACCCCAACCGCAACATGCTCCTACACCCACTACCACTAGTTTGTCTCACCAAAACCACTTCTACCCGCCAGAACTGTACCATCACCAGCACCACCCCTGTGACCCACGCGCTTTCACTGGCGCGTCCCCTACCTCTTACTCACCGCCACCATCCTCCCTTTACCCAATCCCACCCCTCAACGCGGCCCACTACAGGCCTGAGCCTGATCCCGAGCTTCTCAGTCGGCCTATAGACTTCATGGGCTCTAGGCTTCGGCTTAATCTTGGAGGCCGCATCTACTTTGCATCTTCCAATGATGACATCCCTAGTCGACTCTACCGTCCGTATAACTCATCGGTAGAGGTGAGTTGCACGGTATCATCAAACTCGCCGCGGTGCCAGGCGGAAGGTTGCAACGCGGACCTCTCCGACGCGAAGCATTATCACTGCCGCCACAAGGTCTGCGAGTTCCACTCGAAGGCCGCCATTGTCATCGCTGCCGGGTTGACTTAG 633 0.5577 MLEYEWGNPSTITLTGNEGGAATESGQTHRQTLNHNYNLLPNHLLSQPQPQHAPTPTTTSLSHQNHFYPPELYHHQHHPCDPRAFTGASPTSYSPPPSSLYPIPPLNAAHYRPEPDPELLSRPIDFMGSRLRLNLGGRIYFASSNDDIPSRLYRPYNSSVEVSCTVSSNSPRCQAEGCNADLSDAKHYHCRHKVCEFHSKAAIVIAAGLT. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02619 210 MobiDBLite consensus disorder prediction 8 25 - -
Seca2g02619 210 Pfam SBP domain 173 208 IPR004333 GO:0003677
Seca2g02619 210 MobiDBLite consensus disorder prediction 42 66 - -
Seca2g02619 210 Gene3D - 168 210 IPR036893 GO:0003677|GO:0005634
Seca2g02619 210 ProSiteProfiles Zinc finger SBP-type profile. 170 210 IPR004333 GO:0003677
Seca2g02619 210 MobiDBLite consensus disorder prediction 42 73 - -
Seca2g02619 210 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 209 IPR044817 GO:0003677
Seca2g02619 210 MobiDBLite consensus disorder prediction 1 25 - -
Seca2g02619 210 SUPERFAMILY SBT domain 171 209 IPR036893 GO:0003677|GO:0005634
Seca2g02619 210 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02619 Seca-Chr2 69441375 69443871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02619 1 210 SBP-box Gene Family AT1G02065 39.207 2.70e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca2g02619 SBP 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02619 - - vun:114181599 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g02619 2 69441375 69443871 Seca2g02619 2 69441375 69443871 ECH