Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02618 ATGGATTTTGGAGGGAACATGTTCTGTCTCAGCAACAGTAACGGTAACAGTAACAGTAACGGTAACAGTAACAGTTTCCCTTGGGATTCATGGGAAACCGTCACGTCTAACAGTTCTAGTAGGCTCATCAACGCATTCCACACCACCGCCGTTACGGCTGAAACCTCCTCCGTTAACCGTCACGAGGCTGGTCTAGCTAACGCTCTCATGTTTCTCCCTCAAGCTAATAATCCTGTAACCCAAAACGATGGCGGCGTGCAACGATATCGCTACCGCCAGAGCCACCAGCAGTCGCCGTCATCTTACGGCGGAGATGGATCACACGTGCAGCCGGACCCGCATCTGACGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGATGCAAGTGGAAGTGGAAGTGGTGGGTTGGCTTTGACGGATAAGAGAGGAAAAGGGTATTATGGTGGTGGTGGTGGAGTGAAAACGACGGCGTTCGCGGCGGGTACGGTGCCGAGGTGTCAGGTGGAGGGGTGTCACGTGGCACTTTTGAACGCGAAGGACTATCACAGGAGGCACAAGGTTTGTGAGATGCATTCCAAGGCACCAAAAGTTGTGGTGTTAGGGATGGAGCAGAGATTCTGTCAGCAGTGCAGCAGGTTTCATGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGGAGATTGGCAGGTCACAATGAACGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATGCTTCACAAGCAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGGAGTGATTCTTGGCTTTCTCCTGCTGATCTCTCCATAAGATGCAGTGCTGCATTGCGTGAATTGATAGCTGAAAACAGGGCTGCCATCATGGCTAGGCAGTTTGTTTCAGATAGAGACTGGAATTTGCACCACCATGCAGTGGAAGACTTGAAGGAGATCCAACCCGAGTCCAATTATTTCCCACAACAGATGTTTCCACAGACACAGTAA 1002 0.502 MDFGGNMFCLSNSNGNSNSNGNSNSFPWDSWETVTSNSSSRLINAFHTTAVTAETSSVNRHEAGLANALMFLPQANNPVTQNDGGVQRYRYRQSHQQSPSSYGGDGSHVQPDPHLTCLKLGKRHYFEDASGSGSGGLALTDKRGKGYYGGGGGVKTTAFAAGTVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNASQAGGCALSLLSSRSDSWLSPADLSIRCSAALRELIAENRAAIMARQFVSDRDWNLHHHAVEDLKEIQPESNYFPQQMFPQTQ. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02618 333 MobiDBLite consensus disorder prediction 91 111 - -
Seca2g02618 333 MobiDBLite consensus disorder prediction 91 105 - -
Seca2g02618 333 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 277 IPR044817 GO:0003677
Seca2g02618 333 SUPERFAMILY SBT domain 165 246 IPR036893 GO:0003677|GO:0005634
Seca2g02618 333 Pfam SBP domain 167 240 IPR004333 GO:0003677
Seca2g02618 333 Gene3D - 160 228 IPR036893 GO:0003677|GO:0005634
Seca2g02618 333 FunFam Squamosa promoter-binding-like protein 14 159 228 - -
Seca2g02618 333 ProSiteProfiles Zinc finger SBP-type profile. 164 241 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02618 Seca-Chr2 69372667 69377176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02618 117 240 SBP-box Gene Family AT1G27370 53.226 4.11e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca2g02618 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02618 - - gmx:100806582 459.529