Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02612 ATGGTTTCAAAAGAGCAAAAGAGAGTAGCACTGCATGAGAAGCTGCAACTCCTTCGGTCTATAACAAACTCTCATGCTCTAAACAAAACCTCGATCATAATTGATGCATCAAGGTATATTGAAAAGCTTAAGCAAAAAGTTGAAAGACTGAATCAAGAGATAGCCTCTGCAGAAACTTCAAGTGTCCACAATCCCTTGCCTATGGTTACCGTAGAAACCCTAGAAAAGGGATTTCTTATAAATGTATTTTCAGCCAAATGCTGTCCAGGTCTTCTTGTTTCCATATTAGATGTCTTTGAAGAGATGAGACTCACAGTGCTAGAAGCTAGGGTTTCTTGTACAGACACTTTTCGATTTCAAGCAGTTGGAGGAGACAATGAAGAAGAAGGTGAGACTAGTCTTGATGCACAAGCTGTGGAACAAGCGGTGGGACAAGCAATAAAGAATTGGAGCGAAAATGCAGATATTGATCAAGAGTAG 480 0.4 MVSKEQKRVALHEKLQLLRSITNSHALNKTSIIIDASRYIEKLKQKVERLNQEIASAETSSVHNPLPMVTVETLEKGFLINVFSAKCCPGLLVSILDVFEEMRLTVLEARVSCTDTFRFQAVGGDNEEEGETSLDAQAVEQAVGQAIKNWSENADIDQE. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02612 159 CDD ACT_UUR-ACR-like 89 147 - -
Seca2g02612 159 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 153 - -
Seca2g02612 159 Coils Coil 33 60 - -
Seca2g02612 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 66 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02612 Seca-Chr2 69091104 69093935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02612 11 121 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 30.159 2.06e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02612 - - tpra:123919440 255.758