Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02601 ATGAACCTGAGCTACGAACAGAGGCTTCAGGCAGTTGCCAAAATCGTACTCAGTGAAGACGCACGCACTGGCGACGCGCCGCCTTGCGAGGAAGAGCTTGGGGTCAGGGCGACCCTCAAACCCCACCAGGTGGAAGGGGTTTCGTGGCTCATACGAAGGTATAAACTCGGCGTCAACGTCATCCTCGGTGAGATTATATACCCTTTCAATCTTCGTTTCAGTTTACTTTTTATAGTGGTTATATGCCCTCTAAGCGTGACAGATGGTTGGGTGTCAGAGATAGTCAAATTTTCCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATACAGGCGCAGTCTGCGCATGAAAATACATGAATATGTAACAAGGCAGTCATCAACACTCAATGTCATGTTGCCTTTTGATTTGCTGTTAACAACATATGACATTGCACTGATGGATAAGGATTTCCTTTGTCAAATACCATGGCAATATGCAATCATTGATGAAGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGGCGGTTGTTGATGACTGGCACGCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGTACACTGGATCAATTTCTTTCTACATTCAAGGACATCACTGATCTTACCTCAGTTCATAATTCTCCAAAGGTAAAGGAGCGACTTCAAATCCTGAGAAGTGTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTGGAGTGTGGAAATTTAGTGCTGCCACCTCTTACTGAGACAACTGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCTAAGCTACTTGCACTATCTTCTGGAACATCAAATCATCAGTCACTACAAAATATTGTGATACAGCTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCCGAACCATATGAAGAAGGTGAACATCTGGTTCAGGCTAGTGGTAAACTATTGATTTTGGACCAACTTCTTCAGAAGCTGCATTGTTCTGGACACCGGGTTCTTCTTTTTGCTCAAATGACCCATACACTTGATATTTTACAGGATTTTTTGGAGCTACGGAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAACGATTTGCTGCAATAAGGAGTTTTAGTAGCTCATCATCTAATGTGGGCACGGATATTGAAACTGACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGAGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTGAGTTTTGTCTAA 1377 0.4219 MNLSYEQRLQAVAKIVLSEDARTGDAPPCEEELGVRATLKPHQVEGVSWLIRRYKLGVNVILGEIIYPFNLRFSLLFIVVICPLSVTDGWVSEIVKFSPKLEVFKYVGDKEYRRSLRMKIHEYVTRQSSTLNVMLPFDLLLTTYDIALMDKDFLCQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDITDLTSVHNSPKVKERLQILRSVLGAFMLRRTKSKLVECGNLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHCSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSSNVGTDIETDQNGAFVFMISTRAGGVGLNLVAADTVSFV. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02601 458 Gene3D - 72 271 IPR038718 -
Seca2g02601 458 Pfam Helicase conserved C-terminal domain 354 455 IPR001650 -
Seca2g02601 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 260 IPR027417 -
Seca2g02601 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 455 IPR027417 -
Seca2g02601 458 CDD SF2_C_SNF 346 455 - -
Seca2g02601 458 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 78 215 IPR014001 -
Seca2g02601 458 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 31 458 IPR031053 GO:0003678|GO:0006281|GO:0006338
Seca2g02601 458 SMART ultradead3 35 223 IPR014001 -
Seca2g02601 458 Gene3D - 272 458 IPR027417 -
Seca2g02601 458 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 458 IPR001650 -
Seca2g02601 458 Pfam SNF2-related domain 78 333 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02601 Seca-Chr2 68122887 68136644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02601 352 455 RAD5 or RAD16-like Gene Family AT5G22750 34.615 3.58e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca2g02601 SNF2_N 3.3e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02601 K20092 - gmx:100797182 728.783