Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02584 ATGGAAAGTGATGCTAGTGAAAACATGTTTGGCAGCACATTCTCATCTTCTTCATCTACATCCATCATAACCAACACTAAAACCACCATCACATCCTCACCAACATCTTCTACCTTAAACTCAAATTCATGCACCAAAAGAAGCCCCCCCAATGATTCAACAAGTGCTCCTCAAAACTTAGAAAATAGCAAGGAGTGCAACATAAAAAGGCAGAGAAGTGGCAATGACAACAGCAAACACCCAACTTACAGAGGAGTAAGAATGAGAGCTTGGGGCAAATGGGTGTCTGAGATTCGTGAACCAAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCAACTGCAGAAATGGCAGCTAGAGCACATGATGTAGCAGCTTTAGCTATCAAAGGCCATTCAGCTTACCTCAATTTCCCAAATTTGGCTCAACATCTTCCAAGGCCTATCAGCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAACCACTGACTTTTCAGAGGCTAAGCATTGTGAAGCTGAACAAGACCAAACAGAACAAGCTTCTTCTTCAAATCTGTCCATAGACAATACTCCAGCAGAGTCTTCAAGTTCTCCATCTACTACTACTACTAGTGATGATGACACACTGTTTGACTTACCAGATCTATTCCCTGATGGAAATAATGGACTGAACTACTATTCTTCTTGGCATTTATGTGCTGTTGATAGTGGATTCAGGCTTGAGGACCCATTTTTGTGGGAAAACTACTAG 762 0.4213 MESDASENMFGSTFSSSSSTSIITNTKTTITSSPTSSTLNSNSCTKRSPPNDSTSAPQNLENSKECNIKRQRSGNDNSKHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQHLPRPISTSPKDIQAAAAKAATTDFSEAKHCEAEQDQTEQASSSNLSIDNTPAESSSSPSTTTTSDDDTLFDLPDLFPDGNNGLNYYSSWHLCAVDSGFRLEDPFLWENY. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02584 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 52 219 - -
Seca2g02584 253 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Seca2g02584 253 Pfam AP2 domain 81 132 IPR001471 GO:0003700|GO:0006355
Seca2g02584 253 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Seca2g02584 253 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Seca2g02584 253 MobiDBLite consensus disorder prediction 180 212 - -
Seca2g02584 253 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Seca2g02584 253 MobiDBLite consensus disorder prediction 1 64 - -
Seca2g02584 253 MobiDBLite consensus disorder prediction 1 83 - -
Seca2g02584 253 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Seca2g02584 253 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Seca2g02584 253 MobiDBLite consensus disorder prediction 168 212 - -
Seca2g02584 253 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Seca2g02584 253 FunFam Ethylene-responsive transcription factor 2 81 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02584 Seca-Chr2 67662517 67663278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02584 70 249 AP2-EREBP Transcription Factor Family AT2G44940 54.369 1.01e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g02584 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02584 - - pvu:PHAVU_008G141000g 299.286