Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02570 ATGTTTCTTAAGCTTCCAAATGGTGCAGAATGGAAAGTAAATGTGGAGAAACATGATGATGGCAGAGTTTGGTTTCATAAAGGTTGGAAAGAGTTTGTGGAGTATTACTCTCTAGCCCATGGTCATCTATTGGTTTTCAAATTTGATGGAACATCCCATTTTCATGTACACATCCATGATCTGAGTACCATGGAAATAGACTACCCTCTCAACAGTGTAAATCTTAAAAGGGCTAACAATAGTGAAGTAAAAATTCAACCACGGAAGACGCGGAGAACAAATGGAAACAACAAGGATGAGAGTATGTTGAAGAATCCTAGTGAAGAAGAGAGGAGAAACATTGACCTGCAACATACTAATAAAATGTCATCCATTGGTAATTGTGGAGCAAATGAAGCTGTTGGCAATACTTCCTTCATGATGATAATAAGACCATGCCACTTAAGGGGATCACTGCAGGGCTACATCAAACCCGGTGGACAAAATGTAACGCTGCAGGTTGGGGACAGATCATGGAGGGTTAATTTGATACATTACCAAAACAAATATTCAATGACTTACCTTTCTGCAGGATGGTCAATATTCGCAAGGGAAAACAATTTAAAATTAGGAGATGCTTGCTTGTTCGAGCTCCTAAATAGCAGTGATGACATGCTGATGAAAGTTTCCATTTCTAAATGCTCCTCTGTTTAG 693 0.3896 MFLKLPNGAEWKVNVEKHDDGRVWFHKGWKEFVEYYSLAHGHLLVFKFDGTSHFHVHIHDLSTMEIDYPLNSVNLKRANNSEVKIQPRKTRRTNGNNKDESMLKNPSEEERRNIDLQHTNKMSSIGNCGANEAVGNTSFMMIIRPCHLRGSLQGYIKPGGQNVTLQVGDRSWRVNLIHYQNKYSMTYLSAGWSIFARENNLKLGDACLFELLNSSDDMLMKVSISKCSSV. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02570 230 PANTHER B3 DOMAIN-CONTAINING 2 213 - -
Seca2g02570 230 Gene3D - 1 63 IPR015300 -
Seca2g02570 230 SUPERFAMILY DNA-binding pseudobarrel domain 137 224 IPR015300 -
Seca2g02570 230 ProSiteProfiles B3 DNA-binding domain profile. 170 228 IPR003340 GO:0003677
Seca2g02570 230 MobiDBLite consensus disorder prediction 82 109 - -
Seca2g02570 230 MobiDBLite consensus disorder prediction 79 109 - -
Seca2g02570 230 Gene3D - 86 228 IPR015300 -
Seca2g02570 230 ProSiteProfiles B3 DNA-binding domain profile. 1 62 IPR003340 GO:0003677
Seca2g02570 230 SMART B3_2 2 62 IPR003340 GO:0003677
Seca2g02570 230 SMART B3_2 131 225 IPR003340 GO:0003677
Seca2g02570 230 CDD B3_DNA 1 60 IPR003340 GO:0003677
Seca2g02570 230 SUPERFAMILY DNA-binding pseudobarrel domain 2 69 IPR015300 -
Seca2g02570 230 Pfam B3 DNA binding domain 3 60 IPR003340 GO:0003677
Seca2g02570 230 Pfam B3 DNA binding domain 141 217 IPR003340 GO:0003677
Seca2g02570 230 CDD B3_DNA 156 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02570 Seca-Chr2 67327705 67329101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02570 3 68 B3 DNA Binding Superfamily AT3G18990 45.455 6.12e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g02570 B3 6.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02570 - - aprc:113849508 291.582