Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02556 ATGCCTAAGCGTCGTGTCCCGCCTGGGATCTGTGATTTCCCACGACGATGCGGACCCTCCTCTACCAGAATAGGCCCAGACCCCAAACTAAAGTACTTTGGATCACTACCATCAAATGAAGGATACGAACCACTTGAAAACAATGCAGTGCTAACAAAGAATGTTGAAACCAAGAGAATGATTTCTTTTAGGAAAAGGCTATCTTCCTATAGAGACTTCCTTTCTCTCTCTAGGCCAAGCATAAATAAAAACCAGGAGAAGAAGAGGAATAACCGTCTTGACACTCTTTTGAGTCAAGGAGATCACGTGGCACCCGAGAGAGTGAGGGCGACATTGAGGTCGCTCAATACTACTTGTAGAAACTACGCGAAGAAAAGGGTTCCTAGAGTACTTCAGAAAGCGACTAAGGATCTTCAAGTTAAAGCTAAGTTGGTCAACCCTGGGAAACAAATTATAGGATCCGTCCCTAGAGTTGAAGTCGGTGATGAATTCCTATACTGGAGGGAGTTTAACGTTGTTGGCCTTCATCGCCAGATCACCCGTGGCATAGATTATGTGAATGTTAATGGCATGTTGCTTGCTACCAGCGTTGTTTCGGGAGGGGTTTATGATGATGATGTGGAGGATACAAATGAGTTAGTTTATATGGGGGAGGGAGGGAATGTGATAAAGACAGAAAGGAAACCTAAAGATCAGAAACTTAAAAGGGGTAATCTTGCTTTGAAAAACAGTTTCGAGGTTAAGAATCCGGTTGATAAGTATTGGCATGAGAAATGGTTACATGGTAAGTTGGTTTACAAGTTCAAATTGAAAAGAATGCCTGATCAAGCAGAGGTTCCTTGGAATGAGCTAAAGAAATCTCAAATCCTAGAAGGTAGGGATGGTTTATTTGTCAATGACATTTCTTATGGGAAAAAGTTAATTCCTATATGTGCCATTAATACTGTGGATGATGAAGGGCCACCTATGTTTGTATACATGACTCGCATGGTGTATCCTAATTGGTGCAACCCCATTCTTTATGTGGGGTGTGATTGTGTCGATGGATGCTCTGACTCGGTGAAATGTTCTTGTGTAGAGAGGAATAGGGGCAAAATCCCATTCAATGGGAGAAAGGCTATTGTGGTAGGAAGGCCTAATTGTATAGTCTATGAGTGTGGTCCTTCATGTAAGTGCCCTCCAACATGCCAAAACAGGGTTAGCCAACATAGGATTCAATTTCGGTTTGAAATATTTAAGACCAAGACAAAGGGATGGGGTGTGAGATCCCTTAATAGCATTCCTTCTAGAAGTTTTATATGTGAATATACAGGTGAGCTTATTGAATTTAAGGAAGCTAAAAATAGGGCTAATAATTATGAGTATCTGTTTGATATTGGGAATAACTATAGTGATGATACTCTCTGGGAAGAGCTTTCGCGATTATCCCTGACATAG 1437 0.4141 MPKRRVPPGICDFPRRCGPSSTRIGPDPKLKYFGSLPSNEGYEPLENNAVLTKNVETKRMISFRKRLSSYRDFLSLSRPSINKNQEKKRNNRLDTLLSQGDHVAPERVRATLRSLNTTCRNYAKKRVPRVLQKATKDLQVKAKLVNPGKQIIGSVPRVEVGDEFLYWREFNVVGLHRQITRGIDYVNVNGMLLATSVVSGGVYDDDVEDTNELVYMGEGGNVIKTERKPKDQKLKRGNLALKNSFEVKNPVDKYWHEKWLHGKLVYKFKLKRMPDQAEVPWNELKKSQILEGRDGLFVNDISYGKKLIPICAINTVDDEGPPMFVYMTRMVYPNWCNPILYVGCDCVDGCSDSVKCSCVERNRGKIPFNGRKAIVVGRPNCIVYECGPSCKCPPTCQNRVSQHRIQFRFEIFKTKTKGWGVRSLNSIPSRSFICEYTGELIEFKEAKNRANNYEYLFDIGNNYSDDTLWEELSRLSLT. 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02556 478 Pfam SAD/SRA domain 152 251 IPR003105 -
Seca2g02556 478 ProSiteProfiles SET domain profile. 407 478 IPR001214 GO:0005515
Seca2g02556 478 Gene3D - 250 293 IPR036987 -
Seca2g02556 478 SMART G9a_1 148 276 IPR003105 -
Seca2g02556 478 ProSiteProfiles Pre-SET domain profile. 342 404 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02556 478 ProSiteProfiles YDG domain profile. 153 303 IPR003105 -
Seca2g02556 478 SUPERFAMILY SET domain 296 465 IPR046341 -
Seca2g02556 478 Gene3D SET domain 294 477 IPR046341 -
Seca2g02556 478 Gene3D - 135 249 IPR036987 -
Seca2g02556 478 Pfam Pre-SET motif 301 399 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02556 478 SUPERFAMILY PUA domain-like 147 285 IPR015947 -
Seca2g02556 478 SMART preset_2 298 391 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02556 478 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 81 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02556 Seca-Chr2 67101682 67103190 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02556 79 458 Su(var)3-9 homologs AT1G73100 33.412 1.83e-61 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02556 K11420 - lang:109363359 457.988