Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02550 ATGTTGCTCGCTACCAGCATTGTTTCGGGAGGGGTTTATGATGATGATGTAGAGGATACAAATGAGTTAGTTTATATGGGGGAGGGAGGGAATGTGATAAAGAGAGGTAATCTTGCTTTGAAGAATAGTTTCGAGGTTAAGAATCCAATTAGGGTGATACTCAAGTCTGGGTCAAAGGATGAAGGTTCTGATGTGTATGCTTATTATGGGCTTTATCAGGTTGATAAGTATTGGCATGAGAAATGGTTACATGGTAAGTTGGTTTACAAGTTCAAATTTAAAAGAATGCCTGATCAAGGTTTATGTGTCAATGACATTTCTTATGGGAAAGAGTTAATTCCTATATATGCCATTAATACTGTGGATTATGAAGGGCCACCTATGTTTGAATACATGACTCGCATGGTGTATCCTAATTTGTGCAACCCCATTCCTTATGTGGGGTGTGATTGTGTCGATGGATCCTCTGACTCGATGAAATGTTCTTGTGTAGAGAGGAATATGGGTAAAATCAACAAGATTAGCCAACATGGGATTCAATTTCGGTTTGAAATATTTAAGACCAAGACAAAGGGATGGGGTGTGAGATCCCTTAATAGCATTCCTTCTGGAAGTTTGATATGTGAATATACAGGTGAGCTTATTGAATTTGAGGAAGCTAAAAATAGGGCTAATAATGATGAGTATATTTTTGATATTGGGAATAACTATAGTGATGATACTCCCTGGGAAGAGCTTTCGACGATTATCCCTGACATAGGATTGAGTTCTTCTTCCCAAGTAATTAAGCATGGTAGCTTCACAATTGATGCTGCACACCGTGGTAATTTTGGGAGGTTTATTAACCACAACTGCTCCCCTAATCTTTTTGCTCAAATTGTCCTTTATAATCACGATGACAACAAGATTCTCCACATAATGTTGTTTACGGATGACAACATTCCTCGCATGCAAGAGTTGACTTACAATTACAATTACAAGATAGATCAAGTTTGTGGTGCTGATGGCAATATAAGGAAGAAGAATTGCTATTGCGGTGCTCTGGAGTGTACTGGCAGGATGTATTAA 1068 0.383 MLLATSIVSGGVYDDDVEDTNELVYMGEGGNVIKRGNLALKNSFEVKNPIRVILKSGSKDEGSDVYAYYGLYQVDKYWHEKWLHGKLVYKFKFKRMPDQGLCVNDISYGKELIPIYAINTVDYEGPPMFEYMTRMVYPNLCNPIPYVGCDCVDGSSDSMKCSCVERNMGKINKISQHGIQFRFEIFKTKTKGWGVRSLNSIPSGSLICEYTGELIEFEEAKNRANNDEYIFDIGNNYSDDTPWEELSTIIPDIGLSSSSQVIKHGSFTIDAAHRGNFGRFINHNCSPNLFAQIVLYNHDDNKILHIMLFTDDNIPRMQELTYNYNYKIDQVCGADGNIRKKNCYCGALECTGRMY. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02550 355 SMART G9a_1 1 99 IPR003105 -
Seca2g02550 355 Pfam SAD/SRA domain 4 99 IPR003105 -
Seca2g02550 355 ProSiteProfiles YDG domain profile. 1 95 IPR003105 -
Seca2g02550 355 Pfam SET domain 192 325 IPR001214 GO:0005515
Seca2g02550 355 SUPERFAMILY SET domain 89 331 IPR046341 -
Seca2g02550 355 SMART set_7 181 331 IPR001214 GO:0005515
Seca2g02550 355 ProSiteProfiles Post-SET domain profile. 339 355 IPR003616 -
Seca2g02550 355 ProSiteProfiles SET domain profile. 181 325 IPR001214 GO:0005515
Seca2g02550 355 SUPERFAMILY PUA domain-like 3 100 IPR015947 -
Seca2g02550 355 Gene3D SET domain 101 355 IPR046341 -
Seca2g02550 355 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 2 347 - -
Seca2g02550 355 SMART preset_2 103 187 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02550 355 Gene3D - 1 100 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02550 Seca-Chr2 66932054 66933300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02550 1 355 EF-hand Containing Proteins AT5G13960 34.571 2.18e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca2g02550 SET 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02550 K11420 - lang:109363359 471.47