Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02520 ATGTTGAGGAAAAACAAAAATGAGTTTGAGCTTGTTATTAGTGATGTAAATATGCCAGATATGGATGGTTTCAAATTTCTTGAACTAGTGGTAGTTGAAATGGACTTACCAATAATCAAGGCTTATCCAAGGAGATTATCAGAGTTGATGAATATTAAAGGGCTTACAAAAGAACACGTAGCAAGTCATCTCCAGAAATATAGATTTAGTTTGAAAAAGCCAATTCAACAGAGTTGGATCAATAAATATGGAGATTTTGGCACCCTATTTGATTCAAGAAGAATTTTAGAAAACAAACTCCCATCATATGGATCCTATGGAATATGCAAGCTAAACCCTCCATATGGTATGGACTTATCAAGAATGAATTCGTTTGTTCCGTCTCAGAACATTCTCACCTCCACAGAAATACAAAATTCAACAGTATTTCATTCTTCCGTTGAGGCTTCTTCGGTCAATGTTGAATCTGTTGACACTGACATTTGTGCTGATTTATTAGAGTATTGA 507 0.3452 MLRKNKNEFELVISDVNMPDMDGFKFLELVVVEMDLPIIKAYPRRLSELMNIKGLTKEHVASHLQKYRFSLKKPIQQSWINKYGDFGTLFDSRRILENKLPSYGSYGICKLNPPYGMDLSRMNSFVPSQNILTSTEIQNSTVFHSSVEASSVNVESVDTDICADLLEY. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02520 168 Gene3D - 23 73 - -
Seca2g02520 168 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 36 121 IPR044841 GO:0003700|GO:0006355
Seca2g02520 168 SUPERFAMILY CheY-like 6 39 IPR011006 -
Seca2g02520 168 NCBIfam myb-like DNA-binding domain, SHAQKYF class 40 69 IPR006447 GO:0003677
Seca2g02520 168 SUPERFAMILY Homeodomain-like 40 73 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02520 Seca-Chr2 65785642 65787057 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02520 40 73 Response Regulator Gene Family AT2G25180 55.882 9.71e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g02520 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02520 - K14491 cic:CICLE_v10033605mg 95.5153