Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02516 ATGGCGGGAAACCATTTTCCTGTGGGTATGCGTGTTCTTGCGGTTGACGGCGACCAAATTGGTCTAAAAGTGTTGGAGAACCAGCTTCGCAAATGCCAGTATCATGTTGCTACAACTACTCAGGCAATTGAGGCTCTAGAAATGTTGAGGAAAAACAAAAATGAGTTTGAGCTGGTCATTAGTGATGTAAATATGGCAGATATGGATGGTTTCAAATTTCTTGAACAAGTGGTACTTGAAATGGACTTACCAATAATCATGTTGTCAGGATACAGTGATAAACAGTCTGTGATGAAAAGTATTACATACGGCGCATGTGACTGTTTGATAAAACCAGTTAGAATTGATGTGTTGGGCAACATATGGCAACATGTAGTAAGGAAAAAGATTGATGGGAAGCATCGGGATATAGCTGCCAATAAAGAGAAAATCTATAATATGGCTGGTAAAGATGTTCAAAGTATCATCACATCATACAACAATCCTGACCATAATAAATTGGTTGGTAAAAAGAGGAAGAAACAAAGTGAGCAAAAGGAACACCATGATAAAGAGAATGGAGAGAAGAATGAGGAAGCCTCAACTAGGAAGAAGCCTCGTTTAGTTTGGACTGCTGAGCTGCATAGAAAATTTGTTTATGCAGTCAATCAACTTGGACTTGATAAGGCTTATCCAAGGAGATTATTAGAGTTGATGAATATTAAAGGGCTTACAAAAGAACACGTAGCAAGCCATCTCCAGAAATATAGATTGAGTTTGAAAAAACCAATTCAACGTAGTTGGATCAATGAATATGGAGATTTTGGCACCCTGTTTGAATCAAGAAGTATTTTAGAAAACAAACTCCCATCATATGGATCCTATGGAACATGCAAGCTGAACTCCCCATCCCCATATGGCATGAACTTATCAACAATGAATTCCTTTATTCCGTCTCGGAACATTCTCACCTCCACAAAAACACAGAATTCAGCAGTATTTCACTCTCCCGTTGAGGCTTCTTCTGTCCATGTTGAATCTGTTGACACTGACATCTGTGCTGATTTATTAGAGTATTGGCCTAATGAAGCTTGGAGCGGGACTCAGACTCAATTATCTAACTTTTCTGTTCATTCATCTCCATCGAGTGAGGTTTTCAACAGTGATCAACATAGCCACAGTTCCTTAAACTTTTCCTCCACTTTTCCTAGTGAGAAATCTGCAGTAGATTTTTCTTCCCAAAGTGATGTTGCTGATTTTTTAGAGGATGTTAGAGTTCAGATAGAATGCCAAGAAAACTTACTTGAAAATACCTTCCACCAGCAGTGGTGTTTGTCCTCCTTTGGAGGATGTTAG 1335 0.3888 MAGNHFPVGMRVLAVDGDQIGLKVLENQLRKCQYHVATTTQAIEALEMLRKNKNEFELVISDVNMADMDGFKFLEQVVLEMDLPIIMLSGYSDKQSVMKSITYGACDCLIKPVRIDVLGNIWQHVVRKKIDGKHRDIAANKEKIYNMAGKDVQSIITSYNNPDHNKLVGKKRKKQSEQKEHHDKENGEKNEEASTRKKPRLVWTAELHRKFVYAVNQLGLDKAYPRRLLELMNIKGLTKEHVASHLQKYRLSLKKPIQRSWINEYGDFGTLFESRSILENKLPSYGSYGTCKLNSPSPYGMNLSTMNSFIPSRNILTSTKTQNSAVFHSPVEASSVHVESVDTDICADLLEYWPNEAWSGTQTQLSNFSVHSSPSSEVFNSDQHSHSSLNFSSTFPSEKSAVDFSSQSDVADFLEDVRVQIECQENLLENTFHQQWCLSSFGGC. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02516 444 SUPERFAMILY CheY-like 9 129 IPR011006 -
Seca2g02516 444 CDD REC_typeB_ARR-like 12 126 - -
Seca2g02516 444 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160
Seca2g02516 444 SMART REC_2 10 122 IPR001789 GO:0000160
Seca2g02516 444 Gene3D - 194 255 - -
Seca2g02516 444 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Seca2g02516 444 MobiDBLite consensus disorder prediction 158 197 - -
Seca2g02516 444 PIRSF RR_ARR_type-B 2 440 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca2g02516 444 Gene3D - 9 144 - -
Seca2g02516 444 MobiDBLite consensus disorder prediction 173 197 - -
Seca2g02516 444 Pfam Myb-like DNA-binding domain 202 250 IPR001005 -
Seca2g02516 444 Pfam Response regulator receiver domain 12 118 IPR001789 GO:0000160
Seca2g02516 444 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 357 IPR045279 GO:0009736
Seca2g02516 444 FunFam Two-component response regulator 194 256 - -
Seca2g02516 444 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02516 Seca-Chr2 65724208 65727447 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02516 2 255 Response Regulator Gene Family AT2G25180 56.299 5.96e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca2g02516 Response_reg 1.4e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02516 - K14491 gmx:100776075 343.199