Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02511 ATGGCGGGAAACCATTTTCCCGTGGTTGCTACAACTACTCAGGCAATTGAGGCTCTAGAAATGTTGAGGAAAAACAAAAATGAGTTTGAGCTGGTCATTAGTGATGTAAATATGGCAGATATGGATGGTTTCAAATTTCTTGAACAAGTGGTACTTGAAATGGACTTACCAATAATCATGTTGTCAAGATACAGTGATAAACAGTCTGTGATGAAAAGTATTACATGCGGTGCATGTGACTGTTTGATAAAACCAGTTAGAATTGATGTGTTGGGCAACATATGGCAACATGTAGTAAGGAAAAAGATTGATGGGAAGCATTGGGATATGGCTGCCAATAAAGAGAAAATCTATAATATGGCTGGTAAAGATGTTCAAAGTATCATCACATCATACAACAATCCTGACCATAATAAATTGGTTGGTAAAAAGAGGAAGAAACAAAGTGAGCAAAAGGAACACCATGATAAAGAGAATGGAGAGAAGAATGAGAAAGCCTCAACTAGGAAGAAGCCTCGTTTAGTTTGGACTGCTGAGCTGCATAGAAAATTTGTTTATGCAGTCAATCAACTTGGACTTGATAAGGCTTATCCAATGAGATTATTAGAGTTGATGAATATTAAAGGGCTTACAAAAGAACACATAGCAAGCCATCTCCAGAAAACAAACTCCCATCATATGGATCCTGGAACATGCAAGCTGAACTCCCCATCCCCATATGGCATGAACTTATCAACAATGAATTCCTTTATTCCGTCTCGGAACATTCTCACCTCCACAAAAACACAGAATTCAGCAGTATTTCACTCTCCCGTTGAGGCTTCTTCTGTCCATGTTGAATCTGTTGACACTGACATCTGTGCTGATTTATTAGAGTATTGGCCTAATGAAGCTTGGAGCGGGACTCAGACTCAATTATCTAACTTTTCTGTTCATTCATCTCCATCGAGTGAGGTTTTCAACAGTGATCAACATAGCCACAGTTCCTTAAACTTTTCCTCCACTTTTCCTAGTGAGAAATCTGCAGTAGATTTTTCTTCCCAAAGTGATGTTGCTGATTTTTTAGAGGATGTTAGAGTTCAGATAGAATGCCAAGAAAACTTACTTGAAAATACCTTCCACCAGCAGTGGTGTTTGTCCTCCTTTGGAGGATGTTAG 1158 0.3869 MAGNHFPVVATTTQAIEALEMLRKNKNEFELVISDVNMADMDGFKFLEQVVLEMDLPIIMLSRYSDKQSVMKSITCGACDCLIKPVRIDVLGNIWQHVVRKKIDGKHWDMAANKEKIYNMAGKDVQSIITSYNNPDHNKLVGKKRKKQSEQKEHHDKENGEKNEKASTRKKPRLVWTAELHRKFVYAVNQLGLDKAYPMRLLELMNIKGLTKEHIASHLQKTNSHHMDPGTCKLNSPSPYGMNLSTMNSFIPSRNILTSTKTQNSAVFHSPVEASSVHVESVDTDICADLLEYWPNEAWSGTQTQLSNFSVHSSPSSEVFNSDQHSHSSLNFSSTFPSEKSAVDFSSQSDVADFLEDVRVQIECQENLLENTFHQQWCLSSFGGC. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02511 385 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 267 IPR045279 GO:0009736
Seca2g02511 385 CDD REC_typeB_ARR-like 9 99 - -
Seca2g02511 385 MobiDBLite consensus disorder prediction 131 170 - -
Seca2g02511 385 Pfam Response regulator receiver domain 6 91 IPR001789 GO:0000160
Seca2g02511 385 Gene3D - 2 116 - -
Seca2g02511 385 MobiDBLite consensus disorder prediction 146 170 - -
Seca2g02511 385 FunFam Two-component response regulator 167 228 - -
Seca2g02511 385 Gene3D - 167 227 - -
Seca2g02511 385 SUPERFAMILY CheY-like 6 102 IPR011006 -
Seca2g02511 385 SUPERFAMILY Homeodomain-like 168 224 IPR009057 -
Seca2g02511 385 SMART REC_2 1 95 IPR001789 GO:0000160
Seca2g02511 385 NCBIfam myb-like DNA-binding domain, SHAQKYF class 171 224 IPR006447 GO:0003677
Seca2g02511 385 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02511 Seca-Chr2 65683006 65685212 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02511 9 221 Response Regulator Gene Family AT2G25180 53.052 1.84e-62 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g02511 Response_reg 2.4e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02511 K14491 - gmx:100776075 256.914