Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02499 ATGAAACCACCTCAGACCAACCCCATGACTTCAAAACCTATCAATGGAGATGGCTTCAACGGTGACACTACATCAAAGCCAATCCACCTTTTCCGCATCATGCACCATGAAACCCTTTCGCAGGGAAAGCTAAGGATTCCAGAAAAGTTTGTGATGAAATATGGAGAAAGCTTATCCAACACAATGTTTCTTAAGCTTCCAAACGGTGCAGAATGGAAAGTACATGTGGAGAAACATGATGATGGCAGAGTTTGGTTTCACAACGGTTGGAAAGAGTTTGAGGAGTATTACTCATTAGCCCATGGCCATCTATTGGTTTTCAAATTTGATGGAACATCCCATTTTCATGTACACATCTATGATATGAGTACCATGGAAATAGACTACCCTCTCAACAAGGTAGATCTTAAAAGGGCTAACAATAGTCAAGTTCAACCACCTAAGACGAGCAGAACAGGTCGAAAAAACAAAGATGAGGGTATTTTGAAGAATCCAACTGAAGAGAAGAGAAGCATTCAACAGAATACTAAAAGGTCATCCACTTGTAACTATAGACCTCATCAAATTGCTAGCAATACTTCCTTCACAATGAAAATCACAAGTCAATGTTACTTAAGGTGGTCCGTGAAACTGCCAAAGGGATCAATGCAGGGCTACATCAAACCGGGTCCACAAAAAGTAACGCTGCTGGTTGGGGACAAATCATGGACGGTGAAGTTGATTCATTACCCAAACATTCCAAGCAGTTCATTTTCTGCAGGATGGCCAATGTTCGCAGGGGAAAACAATTTAAAAGTAGAAGATACTTGCTTGTTCGAGCTGCTAAATAGTAGTAAGGAAATGGTGATGAAGGTTTCCATTTTCAAAAGGCACTTGTGCTAA 882 0.407 MKPPQTNPMTSKPINGDGFNGDTTSKPIHLFRIMHHETLSQGKLRIPEKFVMKYGESLSNTMFLKLPNGAEWKVHVEKHDDGRVWFHNGWKEFEEYYSLAHGHLLVFKFDGTSHFHVHIYDMSTMEIDYPLNKVDLKRANNSQVQPPKTSRTGRKNKDEGILKNPTEEKRSIQQNTKRSSTCNYRPHQIASNTSFTMKITSQCYLRWSVKLPKGSMQGYIKPGPQKVTLLVGDKSWTVKLIHYPNIPSSSFSAGWPMFAGENNLKVEDTCLFELLNSSKEMVMKVSIFKRHLC. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02499 293 Gene3D - 23 124 IPR015300 -
Seca2g02499 293 PANTHER B3 DOMAIN-CONTAINING 24 279 - -
Seca2g02499 293 ProSiteProfiles B3 DNA-binding domain profile. 194 291 IPR003340 GO:0003677
Seca2g02499 293 Pfam B3 DNA binding domain 34 121 IPR003340 GO:0003677
Seca2g02499 293 Pfam B3 DNA binding domain 207 290 IPR003340 GO:0003677
Seca2g02499 293 MobiDBLite consensus disorder prediction 1 20 - -
Seca2g02499 293 Gene3D - 166 291 IPR015300 -
Seca2g02499 293 SMART B3_2 30 123 IPR003340 GO:0003677
Seca2g02499 293 SMART B3_2 194 291 IPR003340 GO:0003677
Seca2g02499 293 SUPERFAMILY DNA-binding pseudobarrel domain 25 123 IPR015300 -
Seca2g02499 293 CDD B3_DNA 211 289 IPR003340 GO:0003677
Seca2g02499 293 ProSiteProfiles B3 DNA-binding domain profile. 29 123 IPR003340 GO:0003677
Seca2g02499 293 SUPERFAMILY DNA-binding pseudobarrel domain 191 293 IPR015300 -
Seca2g02499 293 MobiDBLite consensus disorder prediction 151 174 - -
Seca2g02499 293 CDD B3_DNA 29 121 IPR003340 GO:0003677
Seca2g02499 293 MobiDBLite consensus disorder prediction 138 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02499 Seca-Chr2 65450920 65452217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02499 130 289 B3 DNA Binding Superfamily AT3G18990 24.118 9.91e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g02499 B3 4.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02499 - - aprc:113849508 326.25