Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02496 ATGCTTCTGAGAGCTCTGATATCTCTGACACGATACAAGGTTTCTCTTGCATTAAGGCTGCTACAAATGTTGTTGCAGAGGCTGCGTTGCAGAGATTTCCTCAGTGGTCAGAGGTTCAGAAAAGTCTTCACAAGCTTCAGCAGAGAGTGCCACGTCATAAGTGAGACTTCAGACAGCACTGATACTTCAGACGGGTTGAGCTACTTCAGACAGCTTCAACTCTTCAGACGAGTTCTGCTTCTTCAGACAGCTTCAACACTTAGTCTTTTTATGTTGCTGCAGAGTGATCATCAAGAATCAAGAAAGAGTCTTCATTGTTGTTCGATCTTCACTTCAAGTCGATTACCTGCAACCAAACACTCTGGTAATCGATTACAGCATCCCTGTAATCGATTACCTGCAAGAAATCTCTCTGGTAATCGATTACAGCCTCCTTGTAATCGATTACCTGCAAACAAACTCTCTGGTAATCGATTACCACAATCCTGTAATCGATTACCAGCGAACAAACAACTCTTCTGGACTACCCAGAACACACTGGTAATCGATTACAGGAATGCTGTAATCGATTACCAAAGAGATTGCTTGCAGGTAATCGATTACAAGGATGCTGTAATCGATTACCAGTGTGTTTGCTTGCAAGTAATCGATTACTGGAGGTGCACAAGATGCACAAGCCCAGTGAGGGGTGAAGTGCAACTCAGGGAGGTGTTGTACTCGAGATGCACAAGCCTAGAGAGGGGTGACGTGCAACTCGGGGAGGTGAACTGCGCGGACCCATTAGAGGGGGGTGCAGAGACCATGATGGGATCCATCATTGTGACAACTAGGGAGATTGATGAGGAACGCCCATTGTGCGGAGTTCCATGTCATGATCCTTGGGATGATGATTATGATGATTACGATGATTATGATGATTACAATGATTATGATGATTATGATGACTGTGACGATATTGATGATGTTTTGGTGTGCATGATGATAGATGAATATGCATTAGCAAATTTGGATTTTATTAAGATAGGGAAAATATGCAGTCATTGTGAGACGGATGAAACTCCTCATTGGAGGCCAGGTCCTTTGGGGCAAAATACATTGTACAATGCTTGTGGCATTCGATTGTTGCCAGAGTATAGATCTGCGTCATGTCCAACTTTTGATGTTAGTAAGCATTCAAATTTTCATAAGATGATTATGAGAAAGGGAGGATATCATATCGACAACGTCGGTCCAAACAACGGGGAAGACGAACCTCAACCTACTCCTACCCTTATCACTGTTGCTACTGTCCTCCACGCCAAACCATTCCTGTACATCTCCAAGATTAAGGTCTTTGGAGGTCAGAATTACTGTAGATGGCAAGAGCGTCTATTTACCATCCTCGACATGCATGGAATGTCTATTGCTCTTACTGATCTGAAGCCATCACAAATGGCATATACTAAAGTCATCGAAGATTGGAATACTACCAATAAGATGCTGGGAAGTAGAACTTCGTCACCATGCACCCAAATGCCGACACAAGATGAGGATGACAATCCTCCCAAGCCAAGGGCTAACTTGGCTGAAGGAGATGACATAATTGTTACGATCGTTTCTCAAGTGAATGTTGTGACAGATATGAATAAATGGGTGGCAGACTCGGTTTTCTCTAAGATAAATTTGAGGTTGACCCGGAAGGGACAAGCCTTTATGTGGGACGAGAAGTGTGAGAGGAGCTTCTTGGAGCTCAAGGAGAGGTTGACCACCACCACGGTGCTAGTGTTGTCGGACCTGTCCAAAACTTTTGAGGTTTATAGTGATGCTTCAGAGTTAGCGGTTGTGGTATTTGCCCTCAAGGTTTGGAGGCATTGCCTGTATGGGGTGAGATTTGAGGTGTTTAGCGCCTATAAGAGTCTTAAGTATTTGTTTGATCAAAAGGAGCCAAAAATGAGGCAAAGGAGGTGGATGGAATTTTTAAAGGATTATAATTTTGAGTTGAAATACCACCCGGGCAAGGCTAATGTGGTGGCCGATGCCATCAGCAAGAAGTCCATGCATGTGTCATCCACGATGCATATCAAATTCAAGCCCCGGAAGTTAGCTTTCCAATTCCACTGGAATCACTCAAATCGGACACCTATAGCTCCAGATATCATCAAAACAAGACAGGACTTGAAGAAGATGTTTTGGTGGGATGACATGAATGAGATCCCAAAGTGTAAATGGGAGGGGATAGTTATGGATTTTGTGATGGGGCTACCTAGAGTCCAAGCAGGGTATGGGGTCATTTGGGTCATTGTGGACCAGCAAACTAAGTCGGCCCATTTCCTACCTATTAGGGCCACCTACCCCTTGAGCAGATTAGAAGGCCTGTATATCAAGGATATTGTAAAGCTCCATGGTATACCCTATAGCATAGTTTTAGATAGAGATCCTAGGTTCACCTCTAGGTTTTGGAATGCACTTCACCAGGCCTTCAGGACTAAATTGAAGTTTAGTACCGTATACCATCCTCAGACTGACGGTCAGTCTGAGAGAACCATCCAGACCCTAGAGGACATGCTTAGAGCTTGTGTGTTAGAGGAGAAAGGTAATTGGGATAGGTACCTACCACTAATAGAGTTTTCCTACAATAACAGTTTCCGTAGCAATATAGGCATGGCGCCATATAAGGCGCTGTATGGTAGGAAGTGTAGGTCCCCACTCTGTTGGTATGAGGTGGAAGAGAGGAACCTATTAGGTCCGGAGTTGGTTCAGGAAACCACAAAGAAAATGAAGAGGATTAGGGAAAAACTCGTAACTTCCCAAAGCCGAAAAAATAGTTATGCTGATAGGAGGAGAAAGGACCTAGAGTTTGAGGAAGGTGACCGTGTGTTTTTTAAAAGGGTTGGTCCTCTTGCTTACAGGATAGTCCTACCACCCCACTTGTCCAGAGTCCATGATATTTTTCATGTATCCCAGCTCAGAAAATTATGCTTATGTATGGTTGTTCATTCTGATCAATTCGAGTGGCTCTTGGGAGTGTCTAGCTTTGCTAAAGCTCACAGCCCCCTTCATGCAGAATTGCTTGCTCTTCATCTCGGCCTTCATCACGCTTGGGAAAATGGTTTTCGCAACCTCTATTGTGAAACTGACTCTGTTGAGGTGTTTCAACTTGTAACAGCAGGGTCAGTTCTTAAAGACAACTTTTTAGCTCCTTTGTTGATGGACATCCTTGCTATTTTGGAGAGGAACTGGGAGGTTAATGTTCAGCATGTTTTGCGTGAAGCCAATTCTTCAACTGATGGCCTCTCGCGAATTGGCTTGGCTAATGAATTGCCTCTGGAGTTTTGGTACTTGCCCCCTGATTGGAATCAGCAGAACATTAGTACAGATAGTTTTGGAGTCTTGTTTCCCTAG 3381 0.4392 MLLRALISLTRYKVSLALRLLQMLLQRLRCRDFLSGQRFRKVFTSFSRECHVISETSDSTDTSDGLSYFRQLQLFRRVLLLQTASTLSLFMLLQSDHQESRKSLHCCSIFTSSRLPATKHSGNRLQHPCNRLPARNLSGNRLQPPCNRLPANKLSGNRLPQSCNRLPANKQLFWTTQNTLVIDYRNAVIDYQRDCLQVIDYKDAVIDYQCVCLQVIDYWRCTRCTSPVRGEVQLREVLYSRCTSLERGDVQLGEVNCADPLEGGAETMMGSIIVTTREIDEERPLCGVPCHDPWDDDYDDYDDYDDYNDYDDYDDCDDIDDVLVCMMIDEYALANLDFIKIGKICSHCETDETPHWRPGPLGQNTLYNACGIRLLPEYRSASCPTFDVSKHSNFHKMIMRKGGYHIDNVGPNNGEDEPQPTPTLITVATVLHAKPFLYISKIKVFGGQNYCRWQERLFTILDMHGMSIALTDLKPSQMAYTKVIEDWNTTNKMLGSRTSSPCTQMPTQDEDDNPPKPRANLAEGDDIIVTIVSQVNVVTDMNKWVADSVFSKINLRLTRKGQAFMWDEKCERSFLELKERLTTTTVLVLSDLSKTFEVYSDASELAVVVFALKVWRHCLYGVRFEVFSAYKSLKYLFDQKEPKMRQRRWMEFLKDYNFELKYHPGKANVVADAISKKSMHVSSTMHIKFKPRKLAFQFHWNHSNRTPIAPDIIKTRQDLKKMFWWDDMNEIPKCKWEGIVMDFVMGLPRVQAGYGVIWVIVDQQTKSAHFLPIRATYPLSRLEGLYIKDIVKLHGIPYSIVLDRDPRFTSRFWNALHQAFRTKLKFSTVYHPQTDGQSERTIQTLEDMLRACVLEEKGNWDRYLPLIEFSYNNSFRSNIGMAPYKALYGRKCRSPLCWYEVEERNLLGPELVQETTKKMKRIREKLVTSQSRKNSYADRRRKDLEFEEGDRVFFKRVGPLAYRIVLPPHLSRVHDIFHVSQLRKLCLCMVVHSDQFEWLLGVSSFAKAHSPLHAELLALHLGLHHAWENGFRNLYCETDSVEVFQLVTAGSVLKDNFLAPLLMDILAILERNWEVNVQHVLREANSSTDGLSRIGLANELPLEFWYLPPDWNQQNISTDSFGVLFP. 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02496 1126 Gene3D - 727 933 IPR036397 GO:0003676
Seca2g02496 1126 CDD RNase_HI_RT_Ty3 604 677 - -
Seca2g02496 1126 CDD RNase_H_like 990 1093 IPR044730 -
Seca2g02496 1126 Pfam Reverse transcriptase-like 997 1091 IPR002156 GO:0003676|GO:0004523
Seca2g02496 1126 SUPERFAMILY DNA/RNA polymerases 556 662 IPR043502 -
Seca2g02496 1126 Pfam GATA zinc finger 345 373 IPR000679 GO:0006355|GO:0043565
Seca2g02496 1126 ProSiteProfiles GATA-type zinc finger domain profile. 339 372 IPR000679 GO:0006355|GO:0043565
Seca2g02496 1126 SMART GATA_3 339 384 IPR000679 GO:0006355|GO:0043565
Seca2g02496 1126 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 341 391 - -
Seca2g02496 1126 ProSiteProfiles Integrase catalytic domain profile. 728 891 IPR001584 GO:0015074
Seca2g02496 1126 PANTHER YALI0A06105P 623 937 - -
Seca2g02496 1126 SUPERFAMILY Ribonuclease H-like 998 1106 IPR012337 -
Seca2g02496 1126 Gene3D - 983 1099 IPR036397 GO:0003676
Seca2g02496 1126 Gene3D - 340 396 IPR013088 GO:0006355|GO:0008270
Seca2g02496 1126 SUPERFAMILY Ribonuclease H-like 730 885 IPR012337 -
Seca2g02496 1126 MobiDBLite consensus disorder prediction 495 520 - -
Seca2g02496 1126 CDD ZnF_GATA 344 390 IPR000679 GO:0006355|GO:0043565
Seca2g02496 1126 MobiDBLite consensus disorder prediction 495 510 - -
Seca2g02496 1126 Pfam RNase H-like domain found in reverse transcriptase 603 656 IPR041373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02496 Seca-Chr2 65214908 65231409 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02496 342 399 C2C2-Gata Transcription Factor Family AT4G32890 53.968 1.96e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca2g02496 RVT_3 1.3e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02496 - - egt:105950954 450.284