Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02494 ATGGGTTCACTAGATGATTTCACATTGTGTGACACTCCTGAGAAAGAAAACATCAATTTTGGGGGAAAGAATGTGTCAAATATCCATATCAATCACTGGTCTCTACCAGATCAAAGCAAGTCAACTGTTGTTAAGAAGCGGAGAACAAATATCCTCAGAGCAAAAAACATATTTGTTGGATCATGGCCAAAATCCGATAGCTATTTTCATAAGTCAGAGCGAAATCTGGATTTTACTAAGATAAAGAAAAGATGTAGTCATTGTGAGACCTATAAAACCCCTCAGTGGAGGCCAGGTCCTTTGGGACGAAATACATTGTGCAATGCTTGTGGGATTCGATACAAGTTAGGGAAATTGTTGCCAGAGTATAGACCTGTGTCAAGTCCAACTTTTGATGCTAATAAGCATTCAAATTTTCATAAGATGATTATGAGAAAGAGAGAATATCATACGGGTTAG 459 0.3769 MGSLDDFTLCDTPEKENINFGGKNVSNIHINHWSLPDQSKSTVVKKRRTNILRAKNIFVGSWPKSDSYFHKSERNLDFTKIKKRCSHCETYKTPQWRPGPLGRNTLCNACGIRYKLGKLLPEYRPVSSPTFDANKHSNFHKMIMRKREYHTG. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02494 152 PANTHER GATA TRANSCRIPTION FACTOR 82 147 - -
Seca2g02494 152 FunFam GATA transcription factor 79 129 - -
Seca2g02494 152 Pfam GATA zinc finger 85 118 IPR000679 GO:0006355|GO:0043565
Seca2g02494 152 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 81 138 - -
Seca2g02494 152 ProSiteProfiles GATA-type zinc finger domain profile. 79 116 IPR000679 GO:0006355|GO:0043565
Seca2g02494 152 CDD ZnF_GATA 84 132 IPR000679 GO:0006355|GO:0043565
Seca2g02494 152 SMART GATA_3 79 133 IPR000679 GO:0006355|GO:0043565
Seca2g02494 152 Gene3D - 72 148 IPR013088 GO:0006355|GO:0008270
Seca2g02494 152 ProSitePatterns GATA-type zinc finger domain. 85 110 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02494 Seca-Chr2 65141379 65141837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02494 24 147 C2C2-Gata Transcription Factor Family AT3G45170 43.548 1.32e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca2g02494 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02494 - - gmx:102662403 130.183