Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02492 ATGATTTCTTTTAGGAAAAGGCCTTCTTCCTATAGAGACTTCCTTTCTCTCTCTAGGCCAAGCATAGATAAAAACAAGGAGAAGAAGAGGAAGAACCCTCTTGACACTCTTTTGAGTCAAGGAGATCACGTGGCACATAAGAGAGTGAGGGTGGCATTGAGGTTGTTTGATACTACTTGTAGGAACTACGCGAAGAAAGGGGTTCCTAGAGCACTTCAGGAAGCGGCTAAGGATCTTCAAGTTAAAGGCAAGTTCGTCAACCTTGGGAAACAAATTATAGGATCCATCCCTGGAATTAAAGTCGGTGATGAATTCTTGTACTGGAGGGAGTTTAACGTTGTTGGCCTTCATCGCCAGATCACCCGTGGCATAGATTATCTGAATGTTAATGGCATGTTGCTCGCTACTAGCGTTGTTTCGAGAGAGATTTATGATGATGATGTTGAGGATACAAATGAGTTAGTTTATATGGGGGAGGGAGGCAATGTGATAAAGAAAGAAAGGAAACCTAAAGATCAGAAACTTAAAAGGGGTAATCTTGCTTTGAAGAACAGTTTCGAGGTTAAGAATCCGATTAGGGTGATACTCAAGTCTGGGTCTAAGGATGGAGGTTCTAATATGTATGCTTATTATGGGCTTTATCAGGTTGATAAGTATTGGCATGAGAAATGGTTACATGGTGAGCTGGTTTACAAGTTCAAATTGAAAAGAATGCCTGATCAAGCAGAGGTTCCTTGGAATGAGCTAAAGAAATCTCAAATCCTGGAAGGCAGAGAGGGTTTGTGTGTCAATGACATTTCTTATGGGAAAGAGTTAATTCCTATATGTGCCATTAATACTGTGGATGATGAACGACCACCTATGTTTGAATACATGACTCGCATGGTGTATCCTAACTGGTGCAACCCCATTCCTTATGTGGGGTGTGATTGTGTCGATGGATGCTCTGACTCGGTGAAGTGTTCTTGTATACAGAGGAATGGGGGTAAAGTCCCGTTCAATGGGAAAAAGGCTATTGTGGTAGGAAGGCCTAATTGTATAGTCTATGAGTGTGGTCCTTCATGTAAGTGCCCTCCAACATGCCAAAATAGGGTTAGCCAAAATGGGATTCAATTTCGGTTTGAAATATTTAAGACCAAGACAAAGGGATGGGGTGTGAGATCCCTTAATAGCATTCCTTCTGGAAGTTTTATATGTGAATATACAGGTGAGCTTATTGAATTTGAGGAAGCTAAAAATAGGGCTAATAATGATGAGTATATGTTTGATATCAGGAATAACTATAGTGATGATACTCTCTGGGAAGAGCTTTCGGCGATTATCCCTGACATAGGGTTGAGTTCTTCTTCCCAAGTAATTGAGCATGGTAGATTCACAATTGATGCTGCACACTGTGGTAATTTTGGGAGGTTTATTAACCACAGTTGCTCCCCTAATATTTTTTCTCAAAATGTCCTTTATGATCATGATGACAATAAGATTCCTCACATAATGTTGTTTGCGGCTGACAACATTCCTCGCATGCAAGAGTTGACTTACAATTACAATTACAAGATTGATCAAGTTTGTGGTGCTGATGGCAATATAAGGAAGAAGAAATGCTATTGCGGTGCTCTAGAGTGTACTGGCAGGATGTATTGA 1641 0.4052 MISFRKRPSSYRDFLSLSRPSIDKNKEKKRKNPLDTLLSQGDHVAHKRVRVALRLFDTTCRNYAKKGVPRALQEAAKDLQVKGKFVNLGKQIIGSIPGIKVGDEFLYWREFNVVGLHRQITRGIDYLNVNGMLLATSVVSREIYDDDVEDTNELVYMGEGGNVIKKERKPKDQKLKRGNLALKNSFEVKNPIRVILKSGSKDGGSNMYAYYGLYQVDKYWHEKWLHGELVYKFKLKRMPDQAEVPWNELKKSQILEGREGLCVNDISYGKELIPICAINTVDDERPPMFEYMTRMVYPNWCNPIPYVGCDCVDGCSDSVKCSCIQRNGGKVPFNGKKAIVVGRPNCIVYECGPSCKCPPTCQNRVSQNGIQFRFEIFKTKTKGWGVRSLNSIPSGSFICEYTGELIEFEEAKNRANNDEYMFDIRNNYSDDTLWEELSAIIPDIGLSSSSQVIEHGRFTIDAAHCGNFGRFINHSCSPNIFSQNVLYDHDDNKIPHIMLFAADNIPRMQELTYNYNYKIDQVCGADGNIRKKKCYCGALECTGRMY. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02492 546 SUPERFAMILY PUA domain-like 90 267 IPR015947 -
Seca2g02492 546 Pfam SAD/SRA domain 93 241 IPR003105 -
Seca2g02492 546 SUPERFAMILY SET domain 258 522 IPR046341 -
Seca2g02492 546 SMART set_7 372 522 IPR001214 GO:0005515
Seca2g02492 546 Gene3D - 78 256 IPR036987 -
Seca2g02492 546 SMART G9a_1 89 241 IPR003105 -
Seca2g02492 546 SMART preset_2 263 356 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02492 546 ProSiteProfiles Post-SET domain profile. 530 546 IPR003616 -
Seca2g02492 546 Gene3D SET domain 257 546 IPR046341 -
Seca2g02492 546 Pfam Pre-SET motif 266 364 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02492 546 Pfam SET domain 383 516 IPR001214 GO:0005515
Seca2g02492 546 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 21 538 - -
Seca2g02492 546 ProSiteProfiles YDG domain profile. 94 237 IPR003105 -
Seca2g02492 546 ProSiteProfiles Pre-SET domain profile. 307 369 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02492 546 ProSiteProfiles SET domain profile. 372 516 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02492 Seca-Chr2 65066668 65068308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02492 81 546 EF-hand Containing Proteins AT5G13960 38.945 4.12e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca2g02492 SAD_SRA 2.3e-41 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02492 K11420 - lang:109363359 701.049