Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02491 ATGATTGAAATCGATGACAATGATGATGATGATAGTGGCTCTCAAGAGAGGTTGGTGCATTCTGAGAAGAAGGGGTTTCAGGCTGTTGTTGATGTTAAAGAGGAAGAAAAGAGTGAGGGTATTGAAAGTTATGTATTTTCTGAGAAAGGTGAAAAATTTGGGAATGATGAAGGGTTGGAGCATTCTCAGGAGAAGGGGTTTCAGGGTTTTGTTGATGATAAAGAAGGAGAAAAGAGTGAGGAAGATAGAGGAAGTTATGCATTTGCTGATAAAGGTGAAAATTTTGGGAATGATAACTGTGGTTGGGGACCTGCAAACCCAATCACAATAGATTCAGATAGGGGTTGTGACTCTGAGGAAGAACGTGGTTCAGCTGGTGATGATATTTGGTCTTCATCAACGGGTAGTGAGGATGTTGAGACTAGTGATGAAGATTTTCTAATTGATGAAGACGAGTATGAAATTTTGAGCAGTGAAGAAAGTCCTAGCTCTTCTGATGATGAGAAGGAGAAAGAATGGAGGAGATATAGCAAGGAGAGGGTGAGAAAGGTGGAGACTGAAAGCAGTGGAATTTGCAGAAGAAGTGGTGAAAGGAAATATAAGCAGGTGGAGGAGGAGGAGGTGGAGCTTGAAAACACTCCATCCTCGGTAAACAATGATGAATGTGGTGTGCAAGATCAAGAGGAATGGAAGGATGTAGATTATGATACTGAGACCTCTAGTGAACTCATGATGAAGGGTTCTTCCCAGCTTTCTCAAGAGGAGGATAATAAGGCAGCAAAGAAACATGAGGGAAAGAGAGTAGAAAGAAGGGTAAAAAATGTCAGTGATGATGTCGAAGGTTTTGGTGATTACCAGAAGAGTTTAGGTTGCTCTAGGCCTTCTGAAGATGAAGCACAGAAGGAAAAGAAGAAACAAGCTAATGACTCTGTGAATCTTGATGGTTATAAAGGAAAAGGGCATCATGAAAAAGGTACTAGTGTGAGAAAAGTTTCTTCATTGCTAAGAAACCAAGAGAAGATAGGAGATTCAGCTAAACATAAAACCATGGAGAACAAGGAAAGGGAGCATAAGGATGGAATTTACAGCAGTAATCGTGAGAAGAAGGCATGGGTGGGCAATGAAGCTGGTTACAGAAATGAGCTGCGGAAGGAGCAACGGTTAATTGAACTCCTTGCTGAATGCTTCTCAGGAATGTATAACTCTGTTAAAGGAGACTCATATGGGTTGGAAGAAAAGAATGATGATGTTTATCAGCTAGAAACTCAGCCACCAGCTTGTGGGGAAACACAGCCATTAAAGTGGAAGGAGCTTAGGGAGGTTGAACCACCACTGGAAAGAACAGAGTCTGAGAAGGAGTTGGATATGTTGTGGAAAGAAATGAATGAAGCGCTTGAATATGAAGAAATTGCTTCCCGGGTGGGCAATATAGGGATAAATGAAGAAATACAAAACACAGGGAGTTCAACCTTTATCTGTAAACACGAATTTTATCTTGACGAGCAGATTGGGGTATATTGCAAATTTTGTTATTATATTGCTACTGAGATCAAATATGTCTCACCACCCGTGGTTGATAGATTTCCCTTGGAAGGATTAGGAAAAACAGTGTCATCTGGTGGAGATAAAGTTTCACTCTTTGAGATTAATAATTCTGGTAGTGACTCAGAGGCTACTTTCATTCATAATGAAGGCACAGTTTGGGACCTGATTCCTAATATCAAGGAAACCTTATATCCTCATCAACAAGAAGGTTTTGAGTTCATTTGGACAAATTTGAGGGGAGCTATTGACCTCCACAAGGTGAGGAGGGCTGATCCTTGTAGTGTGGGTGGATGCATCATTTCTCATGCTCCTGGAACTGGGAAGACGCGTTTAACCATGGTGTTTCTTCAGGCATACTTGGAAGTATTTCCAAAATGCCGACCAGTTATCATTGCTCCTGCTAGCCTATTGCTTACTTGGGAAGATGAGTTCAAAAAATGGGACATAGGAATTCCATTCCACAACCTTAACAATCTTGAATTATCTGGAAAAGAGCACATTAATGCCACTAACAAAGTTGATTGGTCTAGAAATCCACAGCTGAATAAGAATGCTGTGCGTATGGTGAAGTTATATTCATGGTACCAAGAGAAAAGCATCTTGGGAATTAGCTACCATATGTATGAGAAGCTCGCAGGAAAAAATGGAAAGGGGAAAATAAAGAAGAAACATGCAAGTGCGAAGGTGGAGAACACTGAAAGTGGTATGATGGGAAAGGCTCTGCGTGATGCTCCTGGTTTGTTAGTGCTAGATGAAGGGCACACACCTAGAAACCAGCGTAGTCTTATTTTTAAGGTTCTTTCAGAAATTCAAACTCAGAAGCGCATTATCCTTTCAGGGACTCCTTTCCAGAACAATTTTCTGGAACTGTATAACACTCTGTGCTTAGCAGTTCCATCATTTCCTGACACAATACCACATGAACTGAAAAAGTTTTGCCAGAGTAGGCTGATGCAAGAAAAGAAAGCATGTAAAGATGTCACTTGTGAACAGGATTGTTCTGGCAACACAACAGGGAATCCTGTTGATAAAATAATAAACCAGTTGAAACTGCTGATGGATCCTTTTGTTCATGTTCACAAAGGCAGCATTCTTCAAAAACATCTTCCTGGGTTGAGAGATTGTGTGCTGACGTTGAAGCCTGATAGTTTGCAAAATGGAATTCTAGAGAGCATTGAATGTTCTCAGAACACACTGAACTTTGAACACAAGTTAGCTTTGGTATCTATCCATCCATCCCTTTTCCTCTGCTGCTCCTTGTCAGAGAAAGAAGAATCTGTTGTTGACAAGGATCTGTTGGAAAAGCATAGATTGAATCCTTATGTAGGTGTCAAGACCAGATTTTTGGTAGAGTTTATCAGGCTGTGTGAGGCAGTGAATGAGAAAGTCCTTGTTTTTAGCCAATTTATTGATCCTTTGCGTTTAATTATAGACCAACTCAAGTCAGTTTTTAATTGGTATGAGGGGAAGGAAGTGTTTTGTATGTATGGCAAAGTTGATCAAAAACAAAAGCAGTCCCTAATTCATCGCTTCAATGATGCAAATAGCCAAGTGAAGATATTGCTTGCATCAACAAAAGCATGTTCTGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGCTGTTGGATGTTGTGTGGAATCCCTCAGTGGAAAGGCAAGCTATTAGCAGAGCATATAGACTTGGCCAAAAGAGAGTTGTCTACACTTATCATCTTCTCACACAGGGAACCACTGAGTGTACAAAGTATTGTAAACAGGCAGAAAAGGACCGGTTATCTGAACTGGTTTTCTCTGCTAGAAATGCTGAAAATGATAAGCCAGAGAGTTGTGCAGGAAATTTTGAGGATAAAGTTCTTGATCAGATGGTCAGACATGACAAACTCAAAGACATGTTTGGTGAATGTTTGGTACAGCCAAAGGAAAGAAACTTGTTTGAGAGTTTTGGCTCTTGA 3501 0.405 MIEIDDNDDDDSGSQERLVHSEKKGFQAVVDVKEEEKSEGIESYVFSEKGEKFGNDEGLEHSQEKGFQGFVDDKEGEKSEEDRGSYAFADKGENFGNDNCGWGPANPITIDSDRGCDSEEERGSAGDDIWSSSTGSEDVETSDEDFLIDEDEYEILSSEESPSSSDDEKEKEWRRYSKERVRKVETESSGICRRSGERKYKQVEEEEVELENTPSSVNNDECGVQDQEEWKDVDYDTETSSELMMKGSSQLSQEEDNKAAKKHEGKRVERRVKNVSDDVEGFGDYQKSLGCSRPSEDEAQKEKKKQANDSVNLDGYKGKGHHEKGTSVRKVSSLLRNQEKIGDSAKHKTMENKEREHKDGIYSSNREKKAWVGNEAGYRNELRKEQRLIELLAECFSGMYNSVKGDSYGLEEKNDDVYQLETQPPACGETQPLKWKELREVEPPLERTESEKELDMLWKEMNEALEYEEIASRVGNIGINEEIQNTGSSTFICKHEFYLDEQIGVYCKFCYYIATEIKYVSPPVVDRFPLEGLGKTVSSGGDKVSLFEINNSGSDSEATFIHNEGTVWDLIPNIKETLYPHQQEGFEFIWTNLRGAIDLHKVRRADPCSVGGCIISHAPGTGKTRLTMVFLQAYLEVFPKCRPVIIAPASLLLTWEDEFKKWDIGIPFHNLNNLELSGKEHINATNKVDWSRNPQLNKNAVRMVKLYSWYQEKSILGISYHMYEKLAGKNGKGKIKKKHASAKVENTESGMMGKALRDAPGLLVLDEGHTPRNQRSLIFKVLSEIQTQKRIILSGTPFQNNFLELYNTLCLAVPSFPDTIPHELKKFCQSRLMQEKKACKDVTCEQDCSGNTTGNPVDKIINQLKLLMDPFVHVHKGSILQKHLPGLRDCVLTLKPDSLQNGILESIECSQNTLNFEHKLALVSIHPSLFLCCSLSEKEESVVDKDLLEKHRLNPYVGVKTRFLVEFIRLCEAVNEKVLVFSQFIDPLRLIIDQLKSVFNWYEGKEVFCMYGKVDQKQKQSLIHRFNDANSQVKILLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKRVVYTYHLLTQGTTECTKYCKQAEKDRLSELVFSARNAENDKPESCAGNFEDKVLDQMVRHDKLKDMFGECLVQPKERNLFESFGS. 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02491 1166 MobiDBLite consensus disorder prediction 224 239 - -
Seca2g02491 1166 MobiDBLite consensus disorder prediction 138 157 - -
Seca2g02491 1166 Gene3D - 887 1156 IPR027417 -
Seca2g02491 1166 MobiDBLite consensus disorder prediction 193 359 - -
Seca2g02491 1166 SMART helicmild6 993 1078 IPR001650 -
Seca2g02491 1166 MobiDBLite consensus disorder prediction 1 180 - -
Seca2g02491 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 829 IPR027417 -
Seca2g02491 1166 MobiDBLite consensus disorder prediction 340 359 - -
Seca2g02491 1166 MobiDBLite consensus disorder prediction 13 88 - -
Seca2g02491 1166 CDD SF2_C_SNF 947 1089 - -
Seca2g02491 1166 Gene3D - 553 862 IPR038718 -
Seca2g02491 1166 MobiDBLite consensus disorder prediction 255 280 - -
Seca2g02491 1166 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 194 1159 IPR044567 GO:0080188
Seca2g02491 1166 Pfam SNF2-related domain 591 901 IPR000330 GO:0005524|GO:0140658
Seca2g02491 1166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 966 1124 IPR001650 -
Seca2g02491 1166 SMART ultradead3 574 823 IPR014001 -
Seca2g02491 1166 MobiDBLite consensus disorder prediction 294 329 - -
Seca2g02491 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 760 1116 IPR027417 -
Seca2g02491 1166 Coils Coil 193 213 - -
Seca2g02491 1166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 815 IPR014001 -
Seca2g02491 1166 MobiDBLite consensus disorder prediction 162 180 - -
Seca2g02491 1166 MobiDBLite consensus disorder prediction 193 208 - -
Seca2g02491 1166 Pfam Helicase conserved C-terminal domain 965 1078 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02491 Seca-Chr2 64935867 64939961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02491 976 1108 RAD5 or RAD16-like Gene Family AT5G43530 39.098 3.19e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca2g02491 SNF2_N 1.8e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02491 K10875 - gmx:100812737 1117.83