Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02484 ATGCAACTCAATCACCTCTGCATTGTTTTACCACCAAATTCAGGTGAAATGGAGCAACTTGATAAAGGTCAAGGTGTGGAACAATCCTTTCAATCTTCAAAAAAACAAGTTAAGGCCAAACAGACTCACAGGGCTTGTGGGGGAAAAGTTCTTGCTTTGCTTCATGATTCATTGAGCAAGTTATACAACTCAGGGTGGTGGAGAATTTGCCAACATGAAGTGCCGAAAGAAAAGAAGAACTCAAGTGTGTTTCATGACATGGATGGTGTTCAATTTGCTGTCAAGATTGGTAGGGACAATCCAAGGATTTTCAGCTATGCAGAGCTTTTCATAGGGTCCAATGGTTTTAGTGAAGATGAAGTTCTTGGGAGTGGAGGGTTTGGCAAAGTGTACAAGGCTGTTTTGCCTAGTGATGGAACTTTGGTTGCTGTGAAATGCTGCTTAGCAAAGAAAGGGAAGCAATTTGAGAAGAGTTTTGCAGCAGAGTTAACAGCTGTGGCAGATCTTCGTCACAAGAACCTTGTGAGGCTTAGAGGTTGGTGTGTTCATGAAGATCAATTGCTTCTTGTTTATGACTACATGCCTAATCGTAGCCTCGACCGCATACTCTTCCGCAGGAATGAGAAATTGAAGGCTGAGCCTCTTGATTGGGGGCAAAGGTTGAAAATTGTGAAAGGTTTGGCAGCTGCATTGTATTATCTGCATGAACAGTTAGAAACTCAAATCATTCATAGGGATGTTAAAACCAGCAATGTGATGCTTGATTCCCATTTCAATGCTCGCTTGGGTGACTTTGGCATGGCAAGGTGGCTAGAACATGAGCTTGAGTATAAGAATAGGAAAACATCATGCAAAATTGATCACTTCAGATTGGGAGAGACATCAAGGATTGGTGGCACAATTGGGTATCTTCCCCCTGAAAGCTTGCAGAAACCAAGCAATGCAACCTCAAAATCTGATGTCTTCAGCTTTGGCATAGTTGTGCTAGAGGTGGTATCTGGAAGGAGAGCAATAGATCTCACATACCCAGATGATCAAATCATTTTGCTTGATTGGATCAGAAGGCTTTCTGATGAAAGGAAGGTTCTAGAGGCAGCTGATACTAGGCTACAAGATGGATCCTACAAGCTTTCTGAGATGCAGCATCTCATTCACATAGGCCTTCTCTGCACACTCCATGACCCACAATTGAGGCCAAGCATGAAATGGGTTGTGGAAGCAGTTTCTGACATTTGTTTCAAACTTCCACCACTCCCTTCATTTCTCTCCCACCCTCTTTATATCTCTTTGTCTTCCCCATCTGAGACTAGTCCTAGCAGCACAAGTGGCAATAGCTCAGGTACAGAGAATGACTATGTCACAGCCGCAGGGGAAACTGTATATGTAACTGCTGAACACAAAAACAGTGAAATCATCTCTTCTAGGAGCATGCATCACCAGCCACCATTTCCTGTGGTTGAAACTCCAAGGGAAATATCATACAAGGAGATTGTTTCAGCTACAGATAACTTCTCAGATTCAAGAAGGGTAGCAGAATTAGACTTTGGAACAGCTTATCATGGCATCCTTGATGATAGTTACCATGTTTTGGTTAAACGCCTGGGGATGAAGACATGCCCTGCATTGCGTGATAGATTCTCCAATGAACTCAGGAATCTAGGAAGACTTCGCCACAGGAATTTAGTGCAACTTCGTGGATGGTGCACAGAACAAGGAGAGATGCTTGTTGTTTATGATTACTCAGCTAGTAGAATTCTCAGCCAACAACTTCTCCATCATAATAATGGTAGAACTGGCTATTCTGTCCTCCAATGGCATCATAGGTACAATATAGTGAAAGCACTTGCTTCTGCAGTTCTCTATCTACATGAGGAATGGGATGAACAAGTGATCCACAGAAACATTACCTCTTCAGCTGTCATTCTTGAACCAGATATGAACCCAAGACTGAGTTGTTTTGCTCTGGCTGAATTTTTGTCAAGGAATGAGCATGGTCATCATGTAATCACTGACTCTAGAAAATCGGTTCAGGGGATTTTCGGTTACTTGTCACCGGAATATGTGGAATCCGGTGAAGCAACCACTGCTGCTGATGTCTATAGTTTTGGTGTGGTGGTGCTTGAAGTTGTCAGTGGACAGATGGCAGTGGATTTCAGGCAGCAGGAGGTGCTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGACCATTGGAGGAATTAGCTGATATAAGACTCAATGGAGAGTACAACTACAAAGAACTAATGAGGTTGGTAAGATTAGGAATTGCATGCACCCGTTGTAATCCACAATTAAGACCAAGCATGAGACAGATAGTGAGCATCCTTGATGGAAATGACAAATTACTAGAGCTGAAAAACAAGGAGAGCAGGGAAGAGTGGAGACAAAGAAATGCTAGTTCTTTGTCAATGATTAAGAGAATCCAAGCTCTAGGAATACAGTAA 2469 0.4249 MQLNHLCIVLPPNSGEMEQLDKGQGVEQSFQSSKKQVKAKQTHRACGGKVLALLHDSLSKLYNSGWWRICQHEVPKEKKNSSVFHDMDGVQFAVKIGRDNPRIFSYAELFIGSNGFSEDEVLGSGGFGKVYKAVLPSDGTLVAVKCCLAKKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVHEDQLLLVYDYMPNRSLDRILFRRNEKLKAEPLDWGQRLKIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHFNARLGDFGMARWLEHELEYKNRKTSCKIDHFRLGETSRIGGTIGYLPPESLQKPSNATSKSDVFSFGIVVLEVVSGRRAIDLTYPDDQIILLDWIRRLSDERKVLEAADTRLQDGSYKLSEMQHLIHIGLLCTLHDPQLRPSMKWVVEAVSDICFKLPPLPSFLSHPLYISLSSPSETSPSSTSGNSSGTENDYVTAAGETVYVTAEHKNSEIISSRSMHHQPPFPVVETPREISYKEIVSATDNFSDSRRVAELDFGTAYHGILDDSYHVLVKRLGMKTCPALRDRFSNELRNLGRLRHRNLVQLRGWCTEQGEMLVVYDYSASRILSQQLLHHNNGRTGYSVLQWHHRYNIVKALASAVLYLHEEWDEQVIHRNITSSAVILEPDMNPRLSCFALAEFLSRNEHGHHVITDSRKSVQGIFGYLSPEYVESGEATTAADVYSFGVVVLEVVSGQMAVDFRQQEVLLVKKVHEFEMRKRPLEELADIRLNGEYNYKELMRLVRLGIACTRCNPQLRPSMRQIVSILDGNDKLLELKNKESREEWRQRNASSLSMIKRIQALGIQ. 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02484 822 SUPERFAMILY Protein kinase-like (PK-like) 482 786 IPR011009 -
Seca2g02484 822 FunFam Receptor like protein kinase S.2 464 580 - -
Seca2g02484 822 FunFam Receptor like protein kinase S.2 90 193 - -
Seca2g02484 822 FunFam Receptor like protein kinase S.2 582 807 - -
Seca2g02484 822 Gene3D Transferase(Phosphotransferase) domain 1 587 811 - -
Seca2g02484 822 Pfam Protein kinase domain 117 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02484 822 ProSiteProfiles Protein kinase domain profile. 504 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02484 822 ProSitePatterns Protein kinases ATP-binding region signature. 122 151 IPR017441 GO:0005524
Seca2g02484 822 FunFam Receptor like protein kinase S.2 194 414 - -
Seca2g02484 822 SMART serkin_6 116 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02484 822 SUPERFAMILY Protein kinase-like (PK-like) 100 441 IPR011009 -
Seca2g02484 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Seca2g02484 822 Gene3D Phosphorylase Kinase; domain 1 463 580 - -
Seca2g02484 822 Gene3D Transferase(Phosphotransferase) domain 1 194 412 - -
Seca2g02484 822 Pfam Protein tyrosine and serine/threonine kinase 510 783 IPR001245 GO:0004672|GO:0006468
Seca2g02484 822 PANTHER - 68 408 - -
Seca2g02484 822 Gene3D Phosphorylase Kinase; domain 1 89 193 - -
Seca2g02484 822 ProSiteProfiles Protein kinase domain profile. 116 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02484 Seca-Chr2 64501316 64503814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02484 490 785 Receptor kinase-like Gene Family AT5G55830 36.789 7.39e-53 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca2g02484 Pkinase 3.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02484 - - gmx:100796108 1358.97