Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02465 ATGGCTTGCAACAGCAGTTCTTCATCATCTAAGATGATAAGGAAATATGATGTGTTTGTGAGTTTTAGAGGTAAGGATACACGCTATAACTTCACCGATCATCTTTTTGGAGCTCTTCAAAGAAAAGGCATCATTTCATTCAGGGATGATACAAAACTCAAGAAAGGTGAATCCATAGCACCTGAGCTCTTACAATCAATTGAAGGGTCTCAAATTTTTATTGTGGTCTTTTCAAAGAACTATGCTTCCTCAACATGGTGCTTGCGTGAATTGGAAAAGATGCTTGATTGTGTTCAAGTATTAGGAAGACACATTCTACCTGTATTCTATGATGTTGATCCATCTGAGGTGCGAAAACAAAGTGGGAGTTATGAGAAAGCTTTTTCTGAACATGAAGAAAGATTTAAACAAGACTTGGATATGGTGAAAAGATGGAGGGCAGCTCTAACACAAGTGGCTAATCTTTCTGGTTGGGATATACGTGATAAGCCACAGTATGCGGAGATTGAAAAGATTGTTGAAGAAGTAATTCGTATATTAGATCACAATTTTTCAACTCCTCCAACTGATGTAATCGGGATGCATTCTCCTATAGAAGAATTAGAAAAGGTTTTACTTTTGGACTCAGTTGATGATGTTCGGATTGTAGGAATTTGTGGGATGGGTGGAATAGGCAAGACCACTCTTGCTACTGCTTTATACGACAAAATCTCTAATCAATATGATGCTTGCTGTTTTATTGATAACGTAAGCAAACTATATAGAGATTATGGTCCAATTGGTGCAAAAAAACAAATTCTACTTCAAACTTTAAATGAAGAAAATCTTCAAATATGCAATCTCTATAATGCAACTAATATATTACAAAGAAGGCTACCTCGTGTAAAGGCTCTTGTAGTTCTTGACAATGTTGATCAAGTTAAGGATCTACAGAACTTGGTTGCGAATCGTGAATGGTTTGGTGCAGGGAGTAGAGTCATTATAATTTGTAGAGATGAGCATATTTTGAAAGAGTATGGAGTGGATGCAGTTTTTAAAGTTCCACTCATGAATTTTGATGATGCTGAGCAATTGTTTTGTAGAAAAGCTTTCAAATGTGATGATATTATTAGAGATTATGAAGAGGTAGCATCTAGCATACTAAATTATGCTAATCGCCTACCACTAGCAATTAAAGTGTTGGGCTCATTTTTGTTTGATCGAAATGTCTCTGAGTGGAAAAGTGCATTGGCTAGATTGAAAGAAAATTCGAGCAAAGACATCATGGATGTGCTACGATTAAGTTTTGATGCACTCGAGGAAATGGAAAAGGAAATATTTCTAGATATTGCCTGTTTCTTTAATTGGCATGAGGAGCATTATGTTAAGAAAGTTCTAGATTGTTGTGGACTACATCCTGATATTGGAATAAGAGTTCTCATTGATAAATCACTTATAAGCATTTCTTATGGTTTGAACAATTCAGATAGTATGATTGTCATGCATGATTTGTTGCAAGAGTTTGGTAGAAAAATGGTTCATGAGAATTCAACCAAGGAGCCCAGAAAGTGGAGCAGGTTGTGGCTACACAAATATTTTTACAATGTTAGATTGGAGAATATGGAAGAGAACGTTGAAGCCATAGTTCTCAATGATCCATATGAAGAAGAAAAATTAATGGTTGAAGTATTGTCAAAAATGAGTCATCTTAGATTACTCATACTTCATGAAGTGAAATTTTCAGGAAGTCTTAATTGTCTTTCTAATAAATTAAAATATGTTGATTGGCATGAATACCCTTTCATGTATCTCCCATCAAGTTTTCAGCCCAATCAACTTGTTGAATTGATTTTGAAGGATAGCAACATCAAACAACTATGGGAAGGCAAGAAGCATTTGCCTAGTTTGAGAACTATGGACCTTAGCCACTCCAAATATCTAATCAAGATGCCAGATCTTGGAGACGCCCCAAATCTTGAGTGGCTAAATCTTGAAGGGTGTATAAAACTTGTGCACATTGATCGATCCATTGGTCTTCTAGAAAAGCTTATTTTCTTGAATTTGAAAGATTGCAAAAATTTAGCAAGTATACCCGAGAACATTTTGGGTCTTAGTAATCTTGAGTATCTAAATCTCTTAGGTTGTTCAAAAGTGTTTAACAAGCAGCTATTGGATAAAGCAGAGAATGCAGAGCATTTGAAGAAGCTTGATATGAGCGAAGCTACATTACATTCCCAATCAACTTCCTCTATCTTGAAATGGATTATGTTTCCTTTCAATTTCTTGTATACTAGAGGGTACAAAGATTCAGCTACTTGTTTGTTGCCTTCCTTGCCTAACTTCTCTTGTTTGCGAGAACTTGATATCAGTTTTTGCGGTCTCAGCCAAATCCCTAATGCTATTGGATGTATACTTTGTTTAGAGAGATTAAATTTAGGAGGAAACAATTTTGTCACACTACATTGTAGCTTCAAGGAGCTCTCTAAACTTGTGTATTTGAACTTGGAGCATTGCAAGCATTTGAAGTCTTTGCCTGAGCTTCCTTCACGTACTTGCTTGCCAGTGGGAGGAGAATTTCTAATTGGTAAAAAACCACCAGGATCTTATATTTTCAACTGCCCCAAATTGTGTGAGAGGGATTGCAGCAGCATGAGTTTCTCATGGATGATACAACTCCTTCAGGTGAACAATGAATCCCCTTCCTCTATTGATAGAATTAATGTTGTCGTTCCTGGAAATGAAATACCAAAGTGGTTCAACATTCAGAGTGTGGGTAGTTCCATGAGGATAGATCCATCTCCTATTATGGAAGACAATAGTTGGATTGGTGTTGCTTGCTGTGCAGTATTTATGGCACTTGATGATCCAACTACTTGGAAAAATGAATGGGAACCAGAACCAGATATAATGATAGGTTTTCAAAATAAAGGGGTTGGGCGTTATTTTGGTATTCCAATAATTCTCAATAGAGATCTTATCACAGTGAAATCAAATCACTTGTGGCTAATCTATTTCACTCGGGAAACGTTCTTTGATTTTGTGCGCAATAAAGACAGAATACTCAAGAAGGATGTTGATGATATCAAAATGGAAGTTCTATCCAATGACGCCAAAGGGTTGCGTATAGAGGTGAAGAATTGGGGGTATCGTTGGGTATATAAACAGGATCTTGAGCTATTGAACCAAAATGGAAATTCTTTTGCTCGGAAGCGCAAGTTTTTGGAAATTGAAAATGAGGCACAAGCACAATCATAA 3234 0.3639 MACNSSSSSSKMIRKYDVFVSFRGKDTRYNFTDHLFGALQRKGIISFRDDTKLKKGESIAPELLQSIEGSQIFIVVFSKNYASSTWCLRELEKMLDCVQVLGRHILPVFYDVDPSEVRKQSGSYEKAFSEHEERFKQDLDMVKRWRAALTQVANLSGWDIRDKPQYAEIEKIVEEVIRILDHNFSTPPTDVIGMHSPIEELEKVLLLDSVDDVRIVGICGMGGIGKTTLATALYDKISNQYDACCFIDNVSKLYRDYGPIGAKKQILLQTLNEENLQICNLYNATNILQRRLPRVKALVVLDNVDQVKDLQNLVANREWFGAGSRVIIICRDEHILKEYGVDAVFKVPLMNFDDAEQLFCRKAFKCDDIIRDYEEVASSILNYANRLPLAIKVLGSFLFDRNVSEWKSALARLKENSSKDIMDVLRLSFDALEEMEKEIFLDIACFFNWHEEHYVKKVLDCCGLHPDIGIRVLIDKSLISISYGLNNSDSMIVMHDLLQEFGRKMVHENSTKEPRKWSRLWLHKYFYNVRLENMEENVEAIVLNDPYEEEKLMVEVLSKMSHLRLLILHEVKFSGSLNCLSNKLKYVDWHEYPFMYLPSSFQPNQLVELILKDSNIKQLWEGKKHLPSLRTMDLSHSKYLIKMPDLGDAPNLEWLNLEGCIKLVHIDRSIGLLEKLIFLNLKDCKNLASIPENILGLSNLEYLNLLGCSKVFNKQLLDKAENAEHLKKLDMSEATLHSQSTSSILKWIMFPFNFLYTRGYKDSATCLLPSLPNFSCLRELDISFCGLSQIPNAIGCILCLERLNLGGNNFVTLHCSFKELSKLVYLNLEHCKHLKSLPELPSRTCLPVGGEFLIGKKPPGSYIFNCPKLCERDCSSMSFSWMIQLLQVNNESPSSIDRINVVVPGNEIPKWFNIQSVGSSMRIDPSPIMEDNSWIGVACCAVFMALDDPTTWKNEWEPEPDIMIGFQNKGVGRYFGIPIILNRDLITVKSNHLWLIYFTRETFFDFVRNKDRILKKDVDDIKMEVLSNDAKGLRIEVKNWGYRWVYKQDLELLNQNGNSFARKRKFLEIENEAQAQS. 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02465 1077 Gene3D - 11 180 IPR035897 -
Seca2g02465 1077 Gene3D - 181 344 IPR027417 -
Seca2g02465 1077 Gene3D Ribonuclease Inhibitor 716 885 IPR032675 -
Seca2g02465 1077 Gene3D Ribonuclease Inhibitor 549 715 IPR032675 -
Seca2g02465 1077 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 158 IPR035897 -
Seca2g02465 1077 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 865 IPR044974 GO:0006952
Seca2g02465 1077 Gene3D - 350 433 IPR042197 -
Seca2g02465 1077 PRINTS Disease resistance protein signature 384 398 - -
Seca2g02465 1077 PRINTS Disease resistance protein signature 215 230 - -
Seca2g02465 1077 PRINTS Disease resistance protein signature 624 640 - -
Seca2g02465 1077 PRINTS Disease resistance protein signature 291 305 - -
Seca2g02465 1077 ProSiteProfiles TIR domain profile. 14 180 IPR000157 GO:0007165
Seca2g02465 1077 Pfam TIR domain 15 176 IPR000157 GO:0007165
Seca2g02465 1077 Pfam NB-ARC domain 199 419 IPR002182 GO:0043531
Seca2g02465 1077 Pfam Leucine Rich Repeat 605 624 IPR011713 -
Seca2g02465 1077 Pfam C-JID domain 903 1051 IPR045344 -
Seca2g02465 1077 SUPERFAMILY L domain-like 494 881 - -
Seca2g02465 1077 SMART till_3 15 155 IPR000157 GO:0007165
Seca2g02465 1077 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 182 - -
Seca2g02465 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 443 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02465 Seca-Chr2 63717658 63723805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02465 14 803 WRKY Transcription Factor Family AT4G12020 30.398 1.03e-89 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02465 - - gmx:100820213 1283.09