Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02399 ATGGCTAACATGATAGTCTACTTCTCGGTCTTACTTCACATTTCCCTGAGCTTTATTTTGACACAATCAGCACCTGAAGGGTCTCTTATTACTAAGGTTCCAGGCTTCAATGACACTCTACCTTCTAAACACTATGCTGGGTATGTGACAGTGGATGAAAAACATGGAAGGAACTTGTATTACTATTTTGTTGTATCAGAAGGTAAACCATCTAAGGACCCAGTGGTTCTATGGCTTAACGGCGGACCGGGGTGCTCTAGCCTCTATGGCTTTGTATATGAGCATGGTCCTTTTAAGTATATAAAACCAAAGACTAAAGGAACCCTGCCTACATTGCAACTCAATCCATACAGTTGGTCAAAGGTTTCCAACATTATATATTTGGATTCTCCTGCTGGAGTGGGGTTTTCATACTCAAAGAATAAATCTGATTACATAACTGGAGATGTAAAGACTGCTTCTGATACACATACTTTCCTCCTTAAGTGGTTTGAACTATACCCTGAGTTCCTTCCCAACCCATTATTCATTTCTGGAGAGTCGTATGCTGGAATTTATGTACCTACTCTTGCTCAGAAAATAGTGGAAGGTATTGAAGCTGGTAAAAAGCCCAGTCTGAATTTCAAGGGTTACATGATTGGAAATGCTTATACGGATGACGAATTTGATGGTACGAAGGCCTTATTTCCATTTGCACATGGGATGGGTCTTATCAGTGATGATTTGTTTGAGGAGTTCACAGAAAAATGCAAGGGGAAATATGATCCAAGTACCCCAGAGTGCTCAAAACTTTTGTCAAAAGTTATGAAGGTACTTGAAGGATTAAACGACTATGACATTCTAGAACCATGTTATCATGATGATGGGGTGGAGAATCAAAAACCCCATTCTGTGTTGCCATTCAGCTTTAGACAGTTGCATGAGAGTTTCGACCCAAAAAAGTTGCATGAGAGTGATTGGCCTCTACCTATGAGAAAAATAATGTATGGTCATGCTTGGCCCCTCAAAAAAGCTCTTGTAAAAGATGGAAGAGTATCAACTTGGCCACAACTGAGCAAGTTAGTTCCGTGCGAGGATGATGAGGTTGCAACCTCATGGCTAAACAATCACGAGGTCAGGAGAGCAATTTACACTGTAGAGGAAAGTGTGGTCATTAGGTGGCAGTTATGTACACTAAAAATTTATTACGTTTCTGATATTGGAAGCGCGATTGAGTACCACAAGAACCTAACTTCCAAAGGATATCGAGCACTTATATACAGTGGTGATCATGACATGATTATCCCATTTCCTGGAACTAAAGCATGGATGAGATCAATTGGATATAAGATTGTTGATGAATGGAGGCCTTGGTTTGTTAATGATCAAGTTGCTGGGTTTACACAAGGATATGACAAAAATCTTACTTTTCTCACTATAAAGGGAGCTGGGCATGCTGTTCCACAATATAAACCACAAGAGTCATTGAATTTTTACAAGCGGTTTTTGACTGGATTGCCAATATAA 1506 0.3984 MANMIVYFSVLLHISLSFILTQSAPEGSLITKVPGFNDTLPSKHYAGYVTVDEKHGRNLYYYFVVSEGKPSKDPVVLWLNGGPGCSSLYGFVYEHGPFKYIKPKTKGTLPTLQLNPYSWSKVSNIIYLDSPAGVGFSYSKNKSDYITGDVKTASDTHTFLLKWFELYPEFLPNPLFISGESYAGIYVPTLAQKIVEGIEAGKKPSLNFKGYMIGNAYTDDEFDGTKALFPFAHGMGLISDDLFEEFTEKCKGKYDPSTPECSKLLSKVMKVLEGLNDYDILEPCYHDDGVENQKPHSVLPFSFRQLHESFDPKKLHESDWPLPMRKIMYGHAWPLKKALVKDGRVSTWPQLSKLVPCEDDEVATSWLNNHEVRRAIYTVEESVVIRWQLCTLKIYYVSDIGSAIEYHKNLTSKGYRALIYSGDHDMIIPFPGTKAWMRSIGYKIVDEWRPWFVNDQVAGFTQGYDKNLTFLTIKGAGHAVPQYKPQESLNFYKRFLTGLPI. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02399 501 FunFam Carboxypeptidase 403 498 - -
Seca2g02399 501 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Seca2g02399 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Seca2g02399 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 468 481 IPR001563 GO:0004185|GO:0006508
Seca2g02399 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Seca2g02399 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Seca2g02399 501 Gene3D alpha/beta hydrolase 22 305 IPR029058 -
Seca2g02399 501 Gene3D - 354 500 - -
Seca2g02399 501 SUPERFAMILY alpha/beta-Hydrolases 30 500 IPR029058 -
Seca2g02399 501 ProSitePatterns Serine carboxypeptidases, histidine active site. 468 485 IPR033124 GO:0004185
Seca2g02399 501 FunFam Carboxypeptidase 23 306 - -
Seca2g02399 501 FunFam Carboxypeptidase 356 500 - -
Seca2g02399 501 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 485 IPR001563 GO:0004185|GO:0006508
Seca2g02399 501 Pfam Serine carboxypeptidase 34 497 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02399 Seca-Chr2 61256666 61265658 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02399 362 501 Calmodulin-binding Proteins AT2G22960 45.714 4.32e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02399 K16296 - gmx:100792057 691.034