Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02350 ATGTTTAATTGTAACAGCTGTATAAATCAAATTCCAAGTATGGAAGATTCTGATCAACTCGCCAAATCTGCTGAAAACCAACAAACTGAACAAGTGTGTAGTTTCTTTAGAAGACCAGTTAATAAGAAGAATATAAGGAAACGTACTGTTGATAATGAAGATGAGGAGGATGACTCAAACAATGAAAGCTCTTTAATTCATGTTCAGAAAAAGACCTTGAAGCCTGACAATAAGCTGTACTTTTCCACTGGCTCATCAAAAAGCTCTGCATCTGCTGAACCAAGTGAAGAATCCGGGAAACCAGTCTTTCACTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGACAACAAAGCAACAGCAACTCTAGAGACTGAGACTGAGTTTTCGAAAGATGCTCGTGCAATCCGTGAAAGGGCTCTTAAGCAAGCAGTGGAGAGTTTGAAGGGGAAAGGCACAATTTCTGAGGATGAAAAGTTATATAAGGGAATAAACAATTACAAAGACTACAAGGCTGGCTTTCGTAGAGAGCAAACGATTGCTAGTGAAAAAGCTGGTGGGGCTCATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGACATATGTAAGGATTACAAGGAAACTGGTTATTGTGGGTATGGTGATGCATGCAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAAAAGGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGTGGATGAGGAGGACACTAATGTGACTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGAAAGCCATTTGTGGATCCTGTTGTAACAAAGTGCAAGCACTACTTCTGCGAGCATTGTGCGTTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATAGCTGAGGATAAATAA 1026 0.4035 MFNCNSCINQIPSMEDSDQLAKSAENQQTEQVCSFFRRPVNKKNIRKRTVDNEDEEDDSNNESSLIHVQKKTLKPDNKLYFSTGSSKSSASAEPSEESGKPVFHFESSKEIQVQHDNKATATLETETEFSKDARAIRERALKQAVESLKGKGTISEDEKLYKGINNYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEAEKARKMRLAAGEDVDEEDTNVTDEDDDDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKIAEDK. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02350 341 SMART c3hfinal6 205 232 IPR000571 GO:0046872
Seca2g02350 341 ProSitePatterns Zinc finger RING-type signature. 297 306 IPR017907 -
Seca2g02350 341 MobiDBLite consensus disorder prediction 75 95 - -
Seca2g02350 341 PANTHER ZINC FINGER PROTEIN 183 26 341 IPR039971 -
Seca2g02350 341 Pfam Zinc finger, C3HC4 type (RING finger) 281 323 - -
Seca2g02350 341 SMART ring_2 282 319 IPR001841 -
Seca2g02350 341 MobiDBLite consensus disorder prediction 44 101 - -
Seca2g02350 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 231 IPR000571 GO:0046872
Seca2g02350 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 339 IPR013083 -
Seca2g02350 341 FunFam RING finger protein 113A 280 339 - -
Seca2g02350 341 ProSiteProfiles Zinc finger C3H1-type profile. 205 233 IPR000571 GO:0046872
Seca2g02350 341 ProSiteProfiles Zinc finger RING-type profile. 282 320 IPR001841 -
Seca2g02350 341 SUPERFAMILY RING/U-box 281 324 - -
Seca2g02350 341 SUPERFAMILY CCCH zinc finger 204 236 IPR036855 GO:0046872
Seca2g02350 341 CDD RING-HC_RNF113A_B 275 328 - -
Seca2g02350 341 Gene3D - 203 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02350 Seca-Chr2 59527499 59530845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02350 12 341 C2H2 Transcription Factor Family AT1G01350 66.667 3.34e-168 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca2g02350 zf-C3HC4_3 9.1e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02350 K13127 - gmx:100787434 582.408