Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02311 ATGGAAAATCAATTCTTTTCTAATGCTGGTGTCCACCCTCACCTGCATTTTGAGCCTCCACAGCCTCCTTCAATGCCCACTTGGCAATCACTCCCATCTGCCATGGATGTTCAACTAACTCCTTTGAATTGTTCATCTGAGCAAACCCAAGATTGCTTTTACACCCCACCTTGGGATAAGTCAACGGATCATGGTCTTCAGTTTGATTCTGCTCTTAGTTCAATGGTTTCTTCTCCTGCTGCTTCCAATTCCAACATGTCCAATGAGAATTTTGTCATCAGGGAACTGATTGGAAAATTGGGAAACATTGGTGGTGGTTGTTCTGATGAGATCTCACCTCATTCTCACCCTTTGCTCCCTGCATCTTCCTACATCAATGGCAATAACAGCACCAATACTTCATGTTATAGCACCCCTTTGAGTTCTCCTCCTAAGGTGAACATCCCCACTGTAATGAACCACTTGGTGAAAGACAACATACCCAGTTTGGGGAAATCAATGGCCTTGAATTCCACTGTAGCAGAATTCTCAGCTGATCCTGGTTTTGCAGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGCAGAAGTTTCAATGGAAGGACTAGTCAATTGGGGCTGAACAATGCTGAATTGACCCAGAGATCTACTTCCTTGGTGGAAAATGTGAAGCTCCCTAGAGTCTCAAGTAGTCCATCACTAAAAGCACTTGGATCTCAAATGGACAACAAGAATTCTCAATTGCAAGACCTAATGGAAGTTGCTAATTCACAAGAAGAATCTACAATCTCTGAGCAAACCCCAAATGGTGACACTGGGGTTAAGCCTTCCCCTTTTGTCAACTCCAGGAAAAGAAAACCTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAACTTCAACCAACCCTCCCATGGCTGCTGAAGCTAGTGAAGATTCAAATGCAAAGAGAAGCAAGGCAAATGATGGTGAGGGAAATGAAAATGGGCAAGTGAAGGTAGAGGAAGAGTCCAAAGGGGGAACTAGTAATGCAGGTGATGAGAAACAGAACAAGAGTAACTCAAAACCTCCTGAGCCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGATAGTCATAGTCTTGCAGAAAGGGTTCGGAGAGAGAAAATCAGTGAAAGGATGAAGCTTCTCCAAGACCTTGTCCCAGGTTGCAATAAGGTCACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAACGTCAAGTTGAGTTCCTATCTATGAAATTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAATTAATTCTTTGGCACACCCAATATTCCCACTAGATTCCTCAGCACCAGGCTTTTATGGGCAACAACCACAGCAAAACCCAGCAATCCACAATGACATTCCTAATGGAACTGTGACCCACAACTCAGTGGACCCATTACAAAGCCTTGGCATGCAATTACCTCTCCTAAATGAAGGTGGCTCTCAGTATCCACTAACATTCTCTGAAGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCACATAGGAAAACACCAATACAATTTCAGAATTTCAACGGCTCAAATCAAGTACCCCTATGA 1671 0.4279 MENQFFSNAGVHPHLHFEPPQPPSMPTWQSLPSAMDVQLTPLNCSSEQTQDCFYTPPWDKSTDHGLQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGGGCSDEISPHSHPLLPASSYINGNNSTNTSCYSTPLSSPPKVNIPTVMNHLVKDNIPSLGKSMALNSTVAEFSADPGFAERAAKFSCFGSRSFNGRTSQLGLNNAELTQRSTSLVENVKLPRVSSSPSLKALGSQMDNKNSQLQDLMEVANSQEESTISEQTPNGDTGVKPSPFVNSRKRKPSSKGKAKETSTSTNPPMAAEASEDSNAKRSKANDGEGNENGQVKVEEESKGGTSNAGDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSINSLAHPIFPLDSSAPGFYGQQPQQNPAIHNDIPNGTVTHNSVDPLQSLGMQLPLLNEGGSQYPLTFSEDDLHTIVQMGFGQTAHRKTPIQFQNFNGSNQVPL. 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02311 556 SMART finulus 376 426 IPR011598 GO:0046983
Seca2g02311 556 Coils Coil 233 260 - -
Seca2g02311 556 MobiDBLite consensus disorder prediction 310 340 - -
Seca2g02311 556 CDD bHLH_AtBPE_like 360 445 - -
Seca2g02311 556 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 370 420 IPR011598 GO:0046983
Seca2g02311 556 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 439 IPR036638 GO:0046983
Seca2g02311 556 MobiDBLite consensus disorder prediction 253 361 - -
Seca2g02311 556 Pfam Helix-loop-helix DNA-binding domain 374 421 IPR011598 GO:0046983
Seca2g02311 556 MobiDBLite consensus disorder prediction 292 306 - -
Seca2g02311 556 Coils Coil 417 437 - -
Seca2g02311 556 MobiDBLite consensus disorder prediction 253 275 - -
Seca2g02311 556 Gene3D - 367 442 IPR036638 GO:0046983
Seca2g02311 556 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 255 479 IPR024097 GO:0006355
Seca2g02311 556 FunFam Basic helix-loop-helix transcription factor 367 439 - -
Seca2g02311 556 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02311 Seca-Chr2 57949823 57952761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02311 1 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.531 1.02e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g02311 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02311 - - gmx:100787699 863.218