Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02303 ATGGAAGAAGAGTTGGATATTCCCCAACCTGAGGAGATGAACGAGGACTTTGATCTTCCTCCCGAAGACAAGGTGGGTGAGGAGAGAGAGATCGGCAACCACGGCCTCAAGAAGAAGCTCCTCAAGCAAGGTCAAGGCTGGGACACCCCCGAAGTCGGCGATGAAGTTCAAGTTCACTACACTGGGACTTTGCTTGATGGGACTAAGTTCGATTCCAGCCGCGACAGGGTTACTCCTTTCAGCTTCACGCTTGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCACTTTTCACCATCCCTCCTGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCAACAATTCCTCCTAATGCTACACTCCAATTCGATGTTGAGCTACTGTCTTGGACTAGTGTGAAGGACATATGTAAAGATGGTGGCATATTTAAGAAGATACTTACTGAGGGGGAGAAATGGGAGAATCCCAAGGATCCTGATGAAGTATTGGTTAAGTATGAGGTTCGTCTGGAAGATGGAAAGCTTGTTGCAAAGTCTGATGGGGTGGAGTTTACCGTCAACGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGACAGTAAAGCCACAATATGGATTTGGTGAGAAGGGACAGCCAGCACATGGTGATGAAGGTGCAGTTCCTCCAAATGCAACATTGCAGATTACTCTTGAGTTAGTTTCTTGGAAGACTGTATCAGAAGTAACTGGTGACAAGAAGGTCATAAAGAAGATCCTCACGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCGTTGTGAAATTGAAACTAATTGGTAAGCTGCAAGATGGCACTGTCTTTTCAAAAAAGGGCCATGATGAAGATGAGCAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTCATTGACGGACTTGATAGAGCTGTAATGACTATGAAGAAGGGTGAGGTAGCATTATTGACTATTGCGCCCGAGTATGCTTTTGGTTCATCAGAGTCCCAACAAGAGTTGGCAGTGATCCCTCCTAATTCAACTGTGTATTATGAAGTTGAGCTAGTGTCGTTTGAGAAGGAGAAGGAATCCTGGGATCTGAACACTCAAGAGAAACTTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGTGTTGTTTAAAGCTGGTAAATATGCTAGAGCTTCCAAAAGATATGAAAAGGCTGTGAAGTACATCGAGTATGATTCCTCCTTCAGTGAGGAGGAGAAAAAGCAGTCAAAGATCTTGAAGGTTGCCTGCAATCTAAACAATGCTGCTTGCAAGTTGAAGCTAAAAGACTATAAAGAAGCAGAGAAATTGTGTACCAAGGTGTTGGACCTTGAGACCACAAACGTTAAAGCCCTCTATAGAAGGGCCCAGGCATATATGCAGTTGGCTGATTTGGATTTGGCTGAATTGGACATCAAGAAAGCTCTTGAGATTGACCCTGACAACAGGGATGTTAAGCTGGAATACAAGACTTTGAAGGAAAAGGTAAAGGAGTATAACAAAAAGGAGGCGAAATTTTATGGAAATATGTTCAAGTTTACAAAGACCGGATCCTGA 1647 0.4366 MEEELDIPQPEEMNEDFDLPPEDKVGEEREIGNHGLKKKLLKQGQGWDTPEVGDEVQVHYTGTLLDGTKFDSSRDRVTPFSFTLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILTEGEKWENPKDPDEVLVKYEVRLEDGKLVAKSDGVEFTVNEGHYCPALSKAVKTMKKGEKVILTVKPQYGFGEKGQPAHGDEGAVPPNATLQITLELVSWKTVSEVTGDKKVIKKILTEGEGYERPNEGAVVKLKLIGKLQDGTVFSKKGHDEDEQLFEFKTDEEQVIDGLDRAVMTMKKGEVALLTIAPEYAFGSSESQQELAVIPPNSTVYYEVELVSFEKEKESWDLNTQEKLEAAGKKKEEGNVLFKAGKYARASKRYEKAVKYIEYDSSFSEEEKKQSKILKVACNLNNAACKLKLKDYKEAEKLCTKVLDLETTNVKALYRRAQAYMQLADLDLAELDIKKALEIDPDNRDVKLEYKTLKEKVKEYNKKEAKFYGNMFKFTKTGS. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02303 548 SUPERFAMILY FKBP-like 26 146 - -
Seca2g02303 548 Gene3D - 145 258 IPR046357 GO:0003755
Seca2g02303 548 SUPERFAMILY FKBP-like 261 396 - -
Seca2g02303 548 FunFam Peptidylprolyl isomerase 145 258 - -
Seca2g02303 548 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 169 258 IPR001179 GO:0003755
Seca2g02303 548 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Seca2g02303 548 Gene3D Tetratricopeptide repeat domain 382 539 IPR011990 GO:0005515
Seca2g02303 548 PANTHER PEPTIDYLPROLYL ISOMERASE 6 142 - -
Seca2g02303 548 FunFam Peptidylprolyl isomerase 26 144 - -
Seca2g02303 548 FunFam Peptidylprolyl isomerase 259 381 - -
Seca2g02303 548 SUPERFAMILY FKBP-like 145 261 - -
Seca2g02303 548 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g02303 548 Gene3D - 259 380 IPR046357 GO:0003755
Seca2g02303 548 SMART tpr_5 445 478 IPR019734 GO:0005515
Seca2g02303 548 SMART tpr_5 396 429 IPR019734 GO:0005515
Seca2g02303 548 SMART tpr_5 479 512 IPR019734 GO:0005515
Seca2g02303 548 Pfam Tetratricopeptide repeat 479 512 IPR001440 GO:0005515
Seca2g02303 548 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 286 379 IPR001179 GO:0003755
Seca2g02303 548 MobiDBLite consensus disorder prediction 1 18 - -
Seca2g02303 548 SUPERFAMILY TPR-like 385 541 IPR011990 GO:0005515
Seca2g02303 548 Coils Coil 512 532 - -
Seca2g02303 548 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 49 138 IPR001179 GO:0003755
Seca2g02303 548 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 280 376 IPR001179 GO:0003755
Seca2g02303 548 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 164 255 IPR001179 GO:0003755
Seca2g02303 548 Gene3D - 29 144 IPR046357 GO:0003755
Seca2g02303 548 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 53 141 IPR001179 GO:0003755
Seca2g02303 548 FunFam Peptidylprolyl isomerase 384 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02303 Seca-Chr2 57774321 57779322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02303 13 541 Calmodulin-binding Proteins AT3G25230 79.121 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02303 K09571 - gmx:100812632 962.6