Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02292 ATGGTGGGAATGTTGCTTGGACTGCCAGAGGAGACAATTTTGAAGTACATTAAACGTGAAAATTTAGTGTTGGAAGATAAGGAGACTCAAGAAGTATGTTGCATATGTCAGGAAGAATATGTTAATGGAGATGAAGTTGGGAAGCTAGATTGTGAGCACAATTTTCATATTGAGTGCATAAAACAATGGCTCAAGCAAAATAATGAATGCCTCATTTGCAGACAAATGGCATTACTTTCAAATGATGAAGGAGAAGAGAATGACGATGAAGAGCAAATTCCCATCACGAAATTATTTTATATATAG 306 0.3562 MVGMLLGLPEETILKYIKRENLVLEDKETQEVCCICQEEYVNGDEVGKLDCEHNFHIECIKQWLKQNNECLICRQMALLSNDEGEENDDEEQIPITKLFYI. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02292 101 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Seca2g02292 101 Pfam Ring finger domain 33 74 IPR001841 -
Seca2g02292 101 SUPERFAMILY RING/U-box 20 78 - -
Seca2g02292 101 SMART ring_2 33 73 IPR001841 -
Seca2g02292 101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 79 IPR013083 -
Seca2g02292 101 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 78 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02292 Seca-Chr2 57416483 57417105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02292 7 78 C3H Transcription Factor Family AT2G15530 48.718 2.25e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02292 - K22753 lang:109350901 93.2041