Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02290 ATGAGCCCTACCATTAATCATGAAGTATTACCCATGAGCTTATCTCGTTATCCAGATGAATCATTAAAAAATCAGTATGGAACCAATTCTGCTACAGTGAATGCGGATAATAATAATGGATTTGTAGTGGAAGAACAAGGTGACAGTGGCAGCACCTTAGCAAACACAATGTGTTTACCATTCAAGAGAAGTGCTACTGATTTTGGGGGAGAATTTCAAGTAGGTGAAAGTTCGAGCATGGCTGCTGAAGTTGAAATAGACGAACAACATGTTGTTGCTTCCCATGTTGATGTCAATGCTAATTCTAATGCAAATGAAAATATGAACCCATCACCATTAAACATTGGTCCTGCTCAATTAATTACTTTCCATGTGGAATACGGTGGTGAGGTTGAACAACCACTTCTAGTCGATGACAATGATGACATGAGAGACATTATGGAGTCTCAGGTTCTAGTTGCTATGGAACGATTACGCTTTGATCGCGTTCTACCGGCTCGGGATGTTATGGCCTTTGACTATTCAAATGCAGTACGTATGATTGAGGCTGCCACCACAGTTGAGGAACTTGATGAAATAGTGGGAACGTTGCTTGGACTACCGGAGGACACAATTTTGAAGTACATTAAACTTGAAAATTTAGTGCTAGAAGATAAGGAGACTCAAGAAGTATGTTGCATATGTCAGGAAGAATATGTTAATGGAGATGAAGTTGGGAAGCTAGATTGTGAGCACAATTTTCATATTCAGTATGTAAAACAATGGCTCAAGCAAAAAAATGAATGCCCCATTTGTAGACAAATGGCATTACTTTCAAATGATGAAGGAGAAGAGAATGATGATGAAGAGCAAATTCCCATCATGGAATTATTTTATATATAG 882 0.3844 MSPTINHEVLPMSLSRYPDESLKNQYGTNSATVNADNNNGFVVEEQGDSGSTLANTMCLPFKRSATDFGGEFQVGESSSMAAEVEIDEQHVVASHVDVNANSNANENMNPSPLNIGPAQLITFHVEYGGEVEQPLLVDDNDDMRDIMESQVLVAMERLRFDRVLPARDVMAFDYSNAVRMIEAATTVEELDEIVGTLLGLPEDTILKYIKLENLVLEDKETQEVCCICQEEYVNGDEVGKLDCEHNFHIQYVKQWLKQKNECPICRQMALLSNDEGEENDDEEQIPIMELFYI. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02290 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 270 IPR013083 -
Seca2g02290 293 Pfam Ring finger domain 225 266 IPR001841 -
Seca2g02290 293 SUPERFAMILY RING/U-box 213 270 - -
Seca2g02290 293 ProSiteProfiles Zinc finger RING-type profile. 225 266 IPR001841 -
Seca2g02290 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 84 270 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02290 Seca-Chr2 57193767 57203570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02290 130 270 C3H Transcription Factor Family AT2G15530 36.585 1.15e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02290 - K22753 aprc:113858181 98.2117