Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02250 ATGAAGTTCCCAGTCTTTGTTGTTCCATTTGTTCTGCTAAGCTTCATACTATCTCTCTTTGGCTTGATTTTAGCTGACTTGAACTCTGACAGACAAGCCCTCCTTGAGTTTTCTTCTAGTGTTCCACATGCTCCAAGGTTAAACTGGAATGAGACTACTCCAATTTGCACTTCATGGGTTGGTGTGACTTGCAATCCAAATGAGACTCGAGTAATTGGCATCCATCTTCCAGGGGTTGGATTCAAGGGCTCCATTCCAAATAATAACCTAGGAAAACTTGATGCTCTCAGAATTCTGAGCCTTCAATCCAATGGCCTTAGTGGAAATCTTCCTTCTGACATTCTCTCCATTCCTTCACTCCAATATGTAAACCTGCAGCACAATAACTTCTCAGGCCTAATTCCTTCCTCTGTCTCCCCTAAACTCATAGCATTGGATATTTCCTTTAACTCCTTCTCTGGAAGTATCCCACCTACATTTCAGAATCTCAGAAGACTGACCAGCTTGTATCTCCAAAACAATTCCATCTCTGGAACCATCCCTGACTTCAACCTTCCAAGGCTCAAATATTTGAATTTGAGCTATAATAACTTCAATGGCTCAATTCCAAATTCCATCAATCAATTCCCCTATACTTCTTTTGTTGGGAACTTTCTCTTATGTGGGCCACCTCTCAATCTTTGTTCTGCAATCTCCCCTTCTCCATCTCCTTCTCCTGTTTACCAACCACTCTCTCCATCAACTTCCCAAAATCAAAATGCTACCACTTCAAAGAAATTCTTTGGCCTTGCTTCTATCCTTGCTCTAGCAGTTGGAGGCTGTTCCTTCCTCTCTCTCCTAGTTTTGGTGATCTTTGTATGCTGTTTGAAGAGAAAAAAGAGTAAAAGCAGTACTAGAGGTATACTGAAAGGAAAGGCATATTGTGCTGGAAAGGCTGAGATTTCAAAGAGTTTTGGGAGTGGGGTGCAAGAGGCTGAAAAGAACAAATTGTTCTTCTTTGAAGGTTGCTCTTATAGCTTTGACCTTGAAGATTTGTTGAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATACAAGGCTGCATTAGAGGAGGGAACAACAGTTGTAGTTAAAAGGTTGAGGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAACAGATGGAGGTTGTGGGAAGATTTGGACAACACCCCAATGTGTTACCCCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTTTATAACTACATGCCAGGAGGCAGCATGTTTTCCTTGTTGCATGGAAACAGGGGTGCAGGAAGAACTCCATTAGTCTGGGAATCAAGAATGAAGATTGCACTTGGAGCTGCAAAGGGAATTGCTTCCATTCACACAGAGGGTGGTCCAAGGTTTACACATGGCAACATCAAGTCATCCAATGTGCTCATAACCCAAGAAGTTGATGGTTGCATCACTGATGTTGGACTAACTCCTCTAATGAACACCCCATCAACCATGTCAAGAGCCAATGGCTATTGTGCTCCAGAAGTGGCTGAGTCAATGAAGATCACACATAAGTCTGATGTTTACAGCTTTGGGGTGGTCCTTCTTGAAATTCTTACATGGAAGACCCCATTAGGATATGCTGGGTTTAATGACATGGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTCGTGAGGAATGCACAGCTGAAGTTTTTGATAAGGAACTGTTGAGAGGGCAATATGTAGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCATGTGTAGCAAAGGTTGCAGATAATAGGCCAACAATGGATGAAGCTGTTAGAAACATAGAGGAAATTAGGTACCCTGAGTTGAAGAACAGTACATCCTCTGAGTCTGAATCTAATGTACAAACACCATGA 1917 0.4251 MKFPVFVVPFVLLSFILSLFGLILADLNSDRQALLEFSSSVPHAPRLNWNETTPICTSWVGVTCNPNETRVIGIHLPGVGFKGSIPNNNLGKLDALRILSLQSNGLSGNLPSDILSIPSLQYVNLQHNNFSGLIPSSVSPKLIALDISFNSFSGSIPPTFQNLRRLTSLYLQNNSISGTIPDFNLPRLKYLNLSYNNFNGSIPNSINQFPYTSFVGNFLLCGPPLNLCSAISPSPSPSPVYQPLSPSTSQNQNATTSKKFFGLASILALAVGGCSFLSLLVLVIFVCCLKRKKSKSSTRGILKGKAYCAGKAEISKSFGSGVQEAEKNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYKAALEEGTTVVVKRLREVVVGKKEFEQQMEVVGRFGQHPNVLPLRAYYYSKDEKLLVYNYMPGGSMFSLLHGNRGAGRTPLVWESRMKIALGAAKGIASIHTEGGPRFTHGNIKSSNVLITQEVDGCITDVGLTPLMNTPSTMSRANGYCAPEVAESMKITHKSDVYSFGVVLLEILTWKTPLGYAGFNDMVDLPRWVRSVVREECTAEVFDKELLRGQYVEEEMVQMLQIALACVAKVADNRPTMDEAVRNIEEIRYPELKNSTSSESESNVQTP. 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02250 638 Pfam Protein kinase domain 351 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02250 638 PANTHER OS05G0588300 PROTEIN 11 631 - -
Seca2g02250 638 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02250 638 Gene3D Phosphorylase Kinase; domain 1 312 422 - -
Seca2g02250 638 FunFam pollen receptor-like kinase 1 315 422 - -
Seca2g02250 638 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Seca2g02250 638 Gene3D Ribonuclease Inhibitor 141 229 IPR032675 -
Seca2g02250 638 SUPERFAMILY Protein kinase-like (PK-like) 351 615 IPR011009 -
Seca2g02250 638 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Seca2g02250 638 FunFam Nuclear pore complex protein NUP107 27 182 - -
Seca2g02250 638 Gene3D Transferase(Phosphotransferase) domain 1 423 637 - -
Seca2g02250 638 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Seca2g02250 638 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515
Seca2g02250 638 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 423 630 - -
Seca2g02250 638 ProSitePatterns Protein kinases ATP-binding region signature. 353 384 IPR017441 GO:0005524
Seca2g02250 638 SUPERFAMILY L domain-like 39 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02250 Seca-Chr2 54576803 54581487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02250 15 636 Receptor kinase-like Gene Family AT5G58300 58.889 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca2g02250 Pkinase 1.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02250 - - vum:124839146 975.311