Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02248 ATGGAAACTTTGGATGGTAATTCAGACCAATACGCCACCGTTTCTTCTAATTCACCATCATCATCTTCTTCTGGAGGTGTTTATAGTAATGATAGCAATGATAATAGTAATGGAAGTGTAACCTGGTATGGGATGAGGTTACCTTCTGTTAGCCCTTTACATTCCCCACTTTCCTTTCTATTGGATTACTCTGGCATTCTTCGCTCAACCCATGATTCTGAGGATGTGATTGTTAACAATGGAGTTCCTGCTTCGGAATTACGGTCTCAGCTTCAAATGCAATCGTTTGATGATGCTCCTAATGCTCCTGCTGGGACCAGTGCAGGGGAAGTTGCAATAAGGATAATTGGAGCTGGAGAGCATGATCAGAACCACCTTGGAGAAGTGGGGTATAATGATTGTGATGATCTGATTGGTGAGAGAGGTAGAATGCCTTCATTGGATGATGATGCTGAGGGTCATGGTGGAATTACGGCCGGTGAGAGGGTTCCTCTAGTGTCTTCAGCTTCGTCGTCGTCATTGGCTGGTAGTGGACAGGTTGATGGGGATGCTGCTGGGAATGGCACAGAAAGTAACAGCAGGGATTCCTCATCCTACCAGAGGTATGATATCCAGCAGGTTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCACTATTGCTGTTGGTTGTGTTCATCCGACAACATTTACAAGAACTTGCAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCGAATGAAATTGTTAAGAAGCAGACAGCTTTAAAGGGAGATAGGAAAGTCTCTGTTCTTATTGGTATCTCTTTTGCTTTCATTCTTCATGTGATGTGCATTTACTGGTGGTATCAAAATGATGACCTTTTATACCCATTGGTCATGTTTCCTCCAAGACCAACTCCCTTCTGGCATGCAGTATTCATCATCTTAGTCAATGATATATTGGCGCGGCAAGCTGCAATGGCTTTCAAGTGTTTCCTGCTTATATATTACAAAAATGGCAAAGGTCACAACTTCCGTCGGCAGGCTCAAATGTTAACTCTGGTTGAATACACGCTGCTGTTGTATCGAGCCTTGTTGCCGGCACCTGTTTGGTACCGGTTTTTCTTGAACAGGGATTATGGCAGTCTGTTTTCATCACTGACAACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAATGCTTCATTTCTGCCTTAAAAGCCTTATCAAGAAAGGAAATTCATTATGGAGTTTATGCCACAATGGAACAGGTTAATGCTGCTGGTGACCTATGCGCTATATGCCAGGAGAAAATGCTTGCTCCTATCTTGTTGAGCTGTAAACACATTTTCTGTGAAGAGTGTGTATCGGAGTGGTTTGAGAGAGAAAGGACTTGCCCACTATGCAGAGCATTGGTTAAACCTGCTGATCTTCGGACATTTGGAGATGGATCAACAAGTCTATTTTTCCAGCTGTTTTAA 1488 0.4288 METLDGNSDQYATVSSNSPSSSSSGGVYSNDSNDNSNGSVTWYGMRLPSVSPLHSPLSFLLDYSGILRSTHDSEDVIVNNGVPASELRSQLQMQSFDDAPNAPAGTSAGEVAIRIIGAGEHDQNHLGEVGYNDCDDLIGERGRMPSLDDDAEGHGGITAGERVPLVSSASSSSLAGSGQVDGDAAGNGTESNSRDSSSYQRYDIQQVAKWIEQILPFSLLLLVVFIRQHLQELAGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLIGISFAFILHVMCIYWWYQNDDLLYPLVMFPPRPTPFWHAVFIILVNDILARQAAMAFKCFLLIYYKNGKGHNFRRQAQMLTLVEYTLLLYRALLPAPVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEIHYGVYATMEQVNAAGDLCAICQEKMLAPILLSCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02248 495 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 29 495 IPR044235 GO:0061630|GO:1904294
Seca2g02248 495 ProSiteProfiles Zinc finger RING-type profile. 434 472 IPR001841 -
Seca2g02248 495 MobiDBLite consensus disorder prediction 169 197 - -
Seca2g02248 495 SUPERFAMILY RING/U-box 423 477 - -
Seca2g02248 495 SMART ring_2 434 471 IPR001841 -
Seca2g02248 495 MobiDBLite consensus disorder prediction 1 32 - -
Seca2g02248 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 482 IPR013083 -
Seca2g02248 495 CDD RING-HC_RNFT1-like 432 472 - -
Seca2g02248 495 Pfam Zinc finger, C3HC4 type (RING finger) 432 475 - -
Seca2g02248 495 ProSitePatterns Zinc finger RING-type signature. 449 458 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02248 Seca-Chr2 54528445 54534830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02248 53 495 C3H Transcription Factor Family AT5G01960 61.369 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02248 - K22379 gmx:100784614 605.52