Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02173 ATGGTTGATCATTGTGAAGGAAATTCTGTTAATGGAGATGAGGTTAATATTTCGAATGATGGCAATTTTTATTGTAAGGGTGGTGATTTAGGACAGAATGAGGATGAAGAATATATGAAGAGAATTAGTGAATTGACTGTTGATGATATAAGAGGTATTGAATTTGATGATGAGGAAGCAACTTGTAGTTTTTATAAAAGCTATGCAAAATGTAATGGGTTTGTTGTTAGGAAGGATGAGGTAGACCGTGATTTTAAGGGAAATATTGTTATGAGACAACTAGTGTGTAACAGAGAGGGTGAAAGGAAGAAGAAACATTTGATGCATGTAGACAGAGTTAGGCAGCCCAGGGCTCTGACTCGAACTCGGTGTCCTGCAAGGCTAAGAATACATTATAGTTTCAAAACTGGTAAATGGAGGGTTGCTGTATTTGAGGAAAAGCACAATCATGAGTTAACTCCTCTTAAATTTGTTCATTTGATGCCTGCTTATAGAGGTTTGACTGAAGCTGATAAAGTTCAGGTTAATAACTTACAGACACATGGTGTAAGAACTTGCCATATTTTGGGTTTGTTGTTAGGCCAGAAGGGTGGTCATTCAGAGTTGGGTTTTTGTAAGAAGGATCTATATAATCACATTGATAAGGAGAAGAGGGCAGTTATAGAAGATGGGGATGCTTTTGCTGCATTATGTTATTTGCAGGCTAAGATTGTTAACGATCCAATGTCATACACATTATTTACCACTACATATGATGGATGTTTACAGAACTTGTTTTGGGCTGATGGTGCAAGTCGTTTTGATTATGAATGTTTTGGTGACGTCGTGGCTTTTGACACTACTTACAAAAAGAATAAGTATAATAAGCCTCTTGTTATTTTCTGTGGTTATAACAACCATGGTGAGACCACAATTTTTGCTTGTGCTTTAGTTGCTGATGAAAAAACAGAGACCTATAAGTGGGTTTTAGAAACTTTTTTGGATGCCATGTTTGGCAAAGAACCAACAATTGGTGTCACTGATGGAGATGGAGCAATGAGGGAAGCCATTAAGGTTGTGTTTCCTAATGCACATCATAGGCTTTGCTCTTGGCATTTGCATCAAAACGCATGTGAGAATGTAAAGATTCCCAAATTCTTGGAAGACTTTAAATCCTTGATTTATGCTAATTTCACTCCTGAGCAGTTTGAAAATGAGTGGAAGAGTATAATTGAGAAATATGGTGTGTCTAATAACAAATGGGTGAAAAAGGTATATGAGATGAAAAGTATGTGGGCAAGTGCTTTCATGAGAGAGATTTTTTTGTGGTATAAGAACAACCTCTATGTGCGAGGGAATCAATTCTTTTATTAA 1353 0.3659 MVDHCEGNSVNGDEVNISNDGNFYCKGGDLGQNEDEEYMKRISELTVDDIRGIEFDDEEATCSFYKSYAKCNGFVVRKDEVDRDFKGNIVMRQLVCNREGERKKKHLMHVDRVRQPRALTRTRCPARLRIHYSFKTGKWRVAVFEEKHNHELTPLKFVHLMPAYRGLTEADKVQVNNLQTHGVRTCHILGLLLGQKGGHSELGFCKKDLYNHIDKEKRAVIEDGDAFAALCYLQAKIVNDPMSYTLFTTTYDGCLQNLFWADGASRFDYECFGDVVAFDTTYKKNKYNKPLVIFCGYNNHGETTIFACALVADEKTETYKWVLETFLDAMFGKEPTIGVTDGDGAMREAIKVVFPNAHHRLCSWHLHQNACENVKIPKFLEDFKSLIYANFTPEQFENEWKSIIEKYGVSNNKWVKKVYEMKSMWASAFMREIFLWYKNNLYVRGNQFFY. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02173 450 PANTHER OS01G0519700 PROTEIN 47 423 - -
Seca2g02173 450 Pfam FAR1 DNA-binding domain 63 153 IPR004330 -
Seca2g02173 450 Pfam MULE transposase domain 275 369 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02173 Seca-Chr2 51599145 51601092 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g02173 MULE 5.6e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02173 - - tpra:123910662 531.561