Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02169 ATGAATGCGAACGTCAATGCTGGACCGCCTCTCCCTGTGATTGAGTTGAACACGGAACACCTATATATTCCAAAAGCTGTTAGTCAATTGTTGCTGAAGTGTGTTGGAAATGCTATTGAACTTATGGACCTAGTTGGGAATGCTTTCCAAGTTCGTTTATTAAGTGGTAACAAGGGGGTAGTCATGTGGGAAGTGATTCCCATGCTTGTGGCATTATATAGGCTTGAAAGCAATTACTCAATCTCTTTCAAACATGAGTCAGGGAAAAGGTTTATCATTCAGATTAAGGATGTAGAGGGGGAAGAAATTATATACCCAGTTCCAATGCAAGAAACTTTACAGCCGAAACATGAGGTTGTTGACATTAGTTCTGATTCAGAGTCTAAGTATGTAGAAGAGGATCATGTTAATGTTAATGAAGTTGATTTGGGTAGAGAGGGTGTGTACAAGTTTGAGAAAAGGATCACTGCTTCCCAAGCAAAGGGAAAACAGACTCTGGCTTTGCCTCAGTCTTTTGTGAAGGAATTTTTGAAAGGAGAATGGAATGATCTAGTTTTACGCATTAATAATGAGTGGAATTATTTTTGCAAACTGTTGTGGCGCAATCGTAGTAATTCTGTTTGCCACCTTGGTCAAGGATGGTATAATTTCGTGAAGGAGATGCGGCTTCAGAGTGGAGATGTCGTGCAATTTGAGACAATTGCTAATGGTGTTAATTTTGCCCATGTCAGAGTTCTTAGAAGAGGAGTGTCATTTGTGAAAATGTCTTCCCATTCATTCTCCTCACCATCTCGAGGTTCTGTGTCTGGTGATGGTAGATATTGTATGTGTGGGCTTGTTGCCTCAATTAGAACATCATGGACGTCTAAAAATTATGGTCGAAAGTTTTTCCATTGTCCTCAACGACTAAATAGCAGATTCAATAATCATGGATGCAATTACTTTGATTGGATTGATGCACCTGTTTATCGTGTATCAGATTCTCCAAGTCTTGAAGGAAGGAATTTATTTGTAAGGGAGAGGGAGATGGATTTAGAAGCTGAAATTGCAAACCGAGGCTCTGAAATTGCATTTCTTAAGTCATGTCTTAATGAAGCAAAGTTTAAAGAAAAATTGTACTTCAATATTATGTTAGGTTGTTGTTTTAGTTTTGTAGCTTTTGGTTTGTTTTTTTATTTTTAA 1182 0.3807 MNANVNAGPPLPVIELNTEHLYIPKAVSQLLLKCVGNAIELMDLVGNAFQVRLLSGNKGVVMWEVIPMLVALYRLESNYSISFKHESGKRFIIQIKDVEGEEIIYPVPMQETLQPKHEVVDISSDSESKYVEEDHVNVNEVDLGREGVYKFEKRITASQAKGKQTLALPQSFVKEFLKGEWNDLVLRINNEWNYFCKLLWRNRSNSVCHLGQGWYNFVKEMRLQSGDVVQFETIANGVNFAHVRVLRRGVSFVKMSSHSFSSPSRGSVSGDGRYCMCGLVASIRTSWTSKNYGRKFFHCPQRLNSRFNNHGCNYFDWIDAPVYRVSDSPSLEGRNLFVREREMDLEAEIANRGSEIAFLKSCLNEAKFKEKLYFNIMLGCCFSFVAFGLFFYF. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02169 393 Pfam GRF zinc finger 274 320 IPR010666 GO:0008270
Seca2g02169 393 SMART B3_2 151 249 IPR003340 GO:0003677
Seca2g02169 393 Gene3D - 137 249 IPR015300 -
Seca2g02169 393 ProSiteProfiles B3 DNA-binding domain profile. 151 249 IPR003340 GO:0003677
Seca2g02169 393 SUPERFAMILY DNA-binding pseudobarrel domain 148 247 IPR015300 -
Seca2g02169 393 CDD B3_DNA 151 247 IPR003340 GO:0003677
Seca2g02169 393 ProSiteProfiles Zinc finger GRF-type profile. 275 321 IPR010666 GO:0008270
Seca2g02169 393 PANTHER ZINC ION-BINDING PROTEIN 255 364 - -
Seca2g02169 393 Pfam B3 DNA binding domain 151 248 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02169 Seca-Chr2 51586560 51588281 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g02169 B3 5.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02169 - - lja:Lj6g3v0437380.1 93.2041