Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02151 ATGGAAGGTCGCCGGAGGATAACGCTTTATGATCAAATGTCAGCTTCGGAGAACGGCCGAGAGAGGCTAGCCGGCTTGACACTAGACGACGTCTTAGCCAATCAGAAGAGACCATCCCCAAGCCAACAACCTCCCAAGAGTCGAACCCTTCTTGACATCATCAAAGAAGACGAAAGCAACAAAAAGGACCGAAGATCTTGGAAAGCGTTCAAGGACAAGCTTCGGCTAAAGCGTGCTGGTTCTGCTTGGACATCTTCAGTTCATATTCCAACTTCGGATATCCCTATTCCTAACCCAAACAGCAGAAGCTTCACCCAGTTAGGTCGTCGCAACTCGGTCCGACTCCAGACTCACTCCAACTCGGACATGTCAACTCAGTACATGACTCACCAAGTAGATAATCTCGACCCGACGGCCACGGAGGGCTCCGATTCTCCGGCCATGGGGCCGGCAATGAAGCCGCAGTTCACTCGCCGGAGCTCCACCCGTTTCGCCGCCGACTCCTCAGAAAACGCCGGCCCGGGGGGTCTCCGGCCGCAGCTTTCGCGGCGGAACTCCACCACCATGCAAACGGAGCCGTACCGGCGGGGGCGCGTGGTGACATTCCGGGACAATTTCGAGGACGATGATGACGATGACAAGCTCCCGGATGCGGGGAGGACGCTATCGGCGAGGGAGGCAGTGGCGGCGCAGGAGGCGGCGGAAGCTGCGGCGGCGGCTGAGGCAGAGGCGGAGGAGGAGGAGGGGCGGCCTGTGACAATGTCGCTGATGGATTTGCTGGAAGAGACTGATAGGGAAATGGGATTGGAAGGGTCAAGGTATATATTGAGTGATGATGAAGATTTTGATGAAGAAGAAGAAGGGGAAGAGGAGGAGGAAGGAGAAGGTGCTATGGAGTACACTTGCTGTATTTGTATGGTGAGGCATAAAGGTTCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTCAGTAAGGGGAATTGCCCACTCTGCAACAATTTCATTTTAGAGATTCTTGACATTTTTTGA 1053 0.5413 MEGRRRITLYDQMSASENGRERLAGLTLDDVLANQKRPSPSQQPPKSRTLLDIIKEDESNKKDRRSWKAFKDKLRLKRAGSAWTSSVHIPTSDIPIPNPNSRSFTQLGRRNSVRLQTHSNSDMSTQYMTHQVDNLDPTATEGSDSPAMGPAMKPQFTRRSSTRFAADSSENAGPGGLRPQLSRRNSTTMQTEPYRRGRVVTFRDNFEDDDDDDKLPDAGRTLSAREAVAAQEAAEAAAAAEAEAEEEEGRPVTMSLMDLLEETDREMGLEGSRYILSDDEDFDEEEEGEEEEEGEGAMEYTCCICMVRHKGSAFIPCGHTFCRMCSRELMVSKGNCPLCNNFILEILDIF. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02151 350 SMART ring_2 302 339 IPR001841 -
Seca2g02151 350 MobiDBLite consensus disorder prediction 33 64 - -
Seca2g02151 350 Coils Coil 227 250 - -
Seca2g02151 350 SUPERFAMILY RING/U-box 301 346 - -
Seca2g02151 350 CDD RING-HC 300 339 - -
Seca2g02151 350 MobiDBLite consensus disorder prediction 50 64 - -
Seca2g02151 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Seca2g02151 350 MobiDBLite consensus disorder prediction 34 48 - -
Seca2g02151 350 MobiDBLite consensus disorder prediction 1 21 - -
Seca2g02151 350 Pfam Zinc finger, C3HC4 type (RING finger) 300 343 - -
Seca2g02151 350 MobiDBLite consensus disorder prediction 180 194 - -
Seca2g02151 350 ProSiteProfiles Zinc finger RING-type profile. 302 340 IPR001841 -
Seca2g02151 350 PANTHER OS01G0917900 PROTEIN 19 350 - -
Seca2g02151 350 MobiDBLite consensus disorder prediction 136 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02151 Seca-Chr2 50642278 50644552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02151 13 350 C3H Transcription Factor Family AT3G07120 35.864 1.24e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02151 - - gmx:100795449 450.669