Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02133 ATGATTTCTTTTAGGAAAAGGCCTTCTTCCTATAGAGACTTCCTTTCTCTCTCTAGGCCAAGCATAGATAAAAACCAGAAGAAGAGGAAGAACCCTCTTGACACTCTTTTGAGTCAAGGAGATCATGTGGCACGCGAGAGAGTGAAGGCGGCATTGAGGTTGTTCGATACTACTTGTAGAAACTTCGCGAAGAAAGGGGTTCCTAGAGTACTTCAGGAAGCGACTAAGCATCTTCGAGTTAAAGGCAAGTTCGTCAACCCTGGGAAACAAATTATAGGATCCGTCCCTGGAGTTGAAGTCGGTGATGAATTCCTGTATTGGGGGGAGTTTAACGTTGTTGGCCTTCATCGCCAGATCACCCGTGGCATAGATTATGTGAATATTAATGGCATGTTTCTCGCTACCAGCGTTTTTTCGGGAGGGATTTATGATGATGATGTGAAGGATACAAATGAGTTAGTTTATATGGGGGAGGGAGGGAATGTGATAAAGAGAGAAAGGAAACCTAAAGATCAGAAACTTAAAAGGGGTAATCTTGCTTTGAAGAACAGTTTCGAGGAGATAAAGAAATCTCAAAGCCTGGAAGGTAGGGAGGGTTTGTGTGTCAATGACATTTCTTATGGGAAAGAGTTAATTCCTATATGTGCCATTAATATTGTGGATGATGAAGGGCCACCTATGTTTGAATATATGACTCGCATGGTGTATCCTAATTGGTGCAGCCTCATTCCTTATGTGGGGTGTGATTGTGTCGATGGATGCTCTGACTTGGTGAAATGTTCTTGTGTAGAGAGGAATGGGGGTAAAATCCCTTTCAATGGAAAAAAGGCTACTGTGGTAGGAAGGCCTAATTGTATAGTCTATGAGTGTGGTCCTTCATGTAAGTGCCCTCCAACATGCCAAAATAGGGTTAGCCAACATGGGATTCAATTTCGGTTTGAAATATTTAAGACCAAGACAAAGGGATGGGGTGTGAGATCCCTTAATAGCATTCCTTCTGGAAGTTTTATATGTGAATATACAGGTGAGCTTATTGAATTTGAGGAAGCTAAAAGTAGGGCTAATAATGATGAGTATATGTTTGATATTGGGAATAACTATAGTGATGATACTCTCTGGGAAGAGCTTTCGGCGATTATCCCTGACATAGGCTTGAGTTCTTCTTCCCAAGTAATTAAGCATGGTAGCTTCACAATTGATGCTGCACACCGTGGTAATTTTGGGAGGTTTATTAACCACAGTTGCTCCCCTAATCTTTTTGCTCAAAATGTCTTTTATGATCACGATGACAACAAGATTCCTCACATAATGTTGTTTGCGGCTGACAACATTCCTCGCATGCAAGAGTTGACTTACAATTACAATTACAAGATAGATCAAGTTTGTGGTGTTGATGGCAATATAAGGAAGAAGAATTGCTATTGCGGTGCTCTGGAGTGTACTGGCAGGATGTATTGA 1458 0.4129 MISFRKRPSSYRDFLSLSRPSIDKNQKKRKNPLDTLLSQGDHVARERVKAALRLFDTTCRNFAKKGVPRVLQEATKHLRVKGKFVNPGKQIIGSVPGVEVGDEFLYWGEFNVVGLHRQITRGIDYVNINGMFLATSVFSGGIYDDDVKDTNELVYMGEGGNVIKRERKPKDQKLKRGNLALKNSFEEIKKSQSLEGREGLCVNDISYGKELIPICAINIVDDEGPPMFEYMTRMVYPNWCSLIPYVGCDCVDGCSDLVKCSCVERNGGKIPFNGKKATVVGRPNCIVYECGPSCKCPPTCQNRVSQHGIQFRFEIFKTKTKGWGVRSLNSIPSGSFICEYTGELIEFEEAKSRANNDEYMFDIGNNYSDDTLWEELSAIIPDIGLSSSSQVIKHGSFTIDAAHRGNFGRFINHSCSPNLFAQNVFYDHDDNKIPHIMLFAADNIPRMQELTYNYNYKIDQVCGVDGNIRKKNCYCGALECTGRMY. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02133 485 Pfam SAD/SRA domain 92 187 IPR003105 -
Seca2g02133 485 Pfam SET domain 322 455 IPR001214 GO:0005515
Seca2g02133 485 ProSiteProfiles Pre-SET domain profile. 246 308 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02133 485 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 24 477 - -
Seca2g02133 485 Gene3D SET domain 199 485 IPR046341 -
Seca2g02133 485 Pfam Pre-SET motif 205 303 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02133 485 SUPERFAMILY PUA domain-like 78 185 IPR015947 -
Seca2g02133 485 ProSiteProfiles SET domain profile. 311 455 IPR001214 GO:0005515
Seca2g02133 485 ProSiteProfiles YDG domain profile. 93 234 IPR003105 -
Seca2g02133 485 SUPERFAMILY SET domain 198 461 IPR046341 -
Seca2g02133 485 ProSiteProfiles Post-SET domain profile. 469 485 IPR003616 -
Seca2g02133 485 SMART preset_2 202 295 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g02133 485 Gene3D - 76 198 IPR036987 -
Seca2g02133 485 SMART G9a_1 88 204 IPR003105 -
Seca2g02133 485 SMART set_7 311 461 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02133 Seca-Chr2 49727125 49728762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02133 80 485 EF-hand Containing Proteins AT5G13960 33.469 4.16e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca2g02133 SET 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02133 K11420 - lang:109363359 548.51