Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02127 ATGTCCTCTGTTTTCATCGTATTATGTTGTTATTTATTAGATGTTGTTGTTGCCATAAACACCACCACATCATCTCAAATCATCAAAGACCCTGGAACTCTAAGCTCAAATAATGGAAACTTTACCTTGGGGTTCTTCAGCCCTGAAAATTCTACAACACGCTATGTAGGAATTTGGTGCAAGTCTCAACAAACTGTGGTATGGGTGGCTAACAGAAACCAACCACTGAATGATTCTTCTGGGGTTGTTACAATATCTGATGATGGCCATCTTGTGGTGTTGAAGGGACAAAAAGAGGTAATTTGGTCATCAAATGTTGTCAATAATGCATCCAATTCTAGTTTCCATCTTTCAGATTATGGTAGCCTTGTCTTGATTGAAAACAAAACAGGAAATACCATATGGGAGAGTTTCAACCATCCTTCTAATACATTACTTCCTCATATGAAAATTACAAACAATAAAATAACAGGTGAGAAAGTAGAACTTACATCATGGAAAAGCCCTTCTAATCCATCCATTGGAAGCTTCTATGTCACTATTGAATGCCTAAAAGTTGCTCAATTGTTCGTTTGGAATGGAACTCGACCATACTGGCGCAGTGTTCCGTATAACCTTGGACTCTTGATCTATATGCTGAATTCACAAGGCCAATTTCAAGAGAATACTTGGAATGATGAGAAGGAGGAATGGCAAGTTACATGGACTAGTAAACAGTCAGATTGTGATGTATATGGTATATGTGGGGTGTTTGCAATCTGTAGTTCACAGGGCTCACCAATATGTAGCTGTTTGATAGGGAGGAAACCTCTACAGTGTGAAAGGAGCAACAATCAAAACACAAGTGTGGATACTAGTAAACCTGATGGGTTTCTGATATTACAGATGGTCAAAGTTCCTGATTTTGCAGAATGGTCATCTGTTACAAATTGCTTTTGCACTGCATATTCATATGATGCTGTTATGGGCTGTATGTTTTGGATTGGTAATCTAATTGACATACAACAATTCCCAAGTGGAGGAACTGATTTATTTATTCGTTTAGCCAATGAAGAACTTGATGAAGGGCGAAAGAGAAACATGGCAGCCATCATTACAAGTCCATTGATAATAGGAATTTTCATAATCATCACTTGCGCGTATGTCATTTGGAGAAGAAGGACTTTGCACCCAGAAGAAAACACAAGTGATAATGTAATTGGAGAATTGTCACAAGCTAAGCTCCAGGAGCCATTACTACTTAATTTTGAAAAGCTTGCAACAGCCACAAACAACTTCCACTCATCCAACAAACTTGGTCAGGGTGGTTTTGGTCCAGTATACAAGGGGGTACTGCAAGATGGTAAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCAGGACAAGGGCTACAAGAATTCATGAATGAAGTGGTAGTGCTTTTTAAGCTTCAACACCGCAATCTTGTAAGGCTTCTAGGCTGTTGTATTGAAGGAGAGGAAAAGATGTTGATATATGAGTACATGCCAAATAAAAGTTTGGATGCATTTCTCTCTGATCATTCAAAATATAAACTCTTGGATTGGGAGAAACGCTTCAACATAATAGAAGGAATAGCTCGAGGATTGCTTTACCTTCATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGAGGAGCTGAATCCAAAAATATCATATTTTGGTATGGCCAGAATCTTTGGTGGGAGTGAAGATCAAGCCAATACCCAAAGGGTTGTTGGAAGATAG 1749 0.3842 MSSVFIVLCCYLLDVVVAINTTTSSQIIKDPGTLSSNNGNFTLGFFSPENSTTRYVGIWCKSQQTVVWVANRNQPLNDSSGVVTISDDGHLVVLKGQKEVIWSSNVVNNASNSSFHLSDYGSLVLIENKTGNTIWESFNHPSNTLLPHMKITNNKITGEKVELTSWKSPSNPSIGSFYVTIECLKVAQLFVWNGTRPYWRSVPYNLGLLIYMLNSQGQFQENTWNDEKEEWQVTWTSKQSDCDVYGICGVFAICSSQGSPICSCLIGRKPLQCERSNNQNTSVDTSKPDGFLILQMVKVPDFAEWSSVTNCFCTAYSYDAVMGCMFWIGNLIDIQQFPSGGTDLFIRLANEELDEGRKRNMAAIITSPLIIGIFIIITCAYVIWRRRTLHPEENTSDNVIGELSQAKLQEPLLLNFEKLATATNNFHSSNKLGQGGFGPVYKGVLQDGKEIAVKRLSRASGQGLQEFMNEVVVLFKLQHRNLVRLLGCCIEGEEKMLIYEYMPNKSLDAFLSDHSKYKLLDWEKRFNIIEGIARGLLYLHRDLKASNILLDEELNPKISYFGMARIFGGSEDQANTQRVVGR. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02127 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Seca2g02127 582 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 572 - -
Seca2g02127 582 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 172 IPR036426 -
Seca2g02127 582 SUPERFAMILY Protein kinase-like (PK-like) 411 576 IPR011009 -
Seca2g02127 582 ProSiteProfiles Bulb-type lectin domain profile. 19 138 IPR001480 -
Seca2g02127 582 Pfam Protein tyrosine and serine/threonine kinase 428 568 IPR001245 GO:0004672|GO:0006468
Seca2g02127 582 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 392 501 - -
Seca2g02127 582 ProSiteProfiles Protein kinase domain profile. 426 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02127 582 Gene3D Phosphorylase Kinase; domain 1 390 501 - -
Seca2g02127 582 Pfam S-locus glycoprotein domain 209 270 IPR000858 GO:0048544
Seca2g02127 582 SMART serkin_6 426 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02127 582 CDD PAN_AP_plant 270 349 - -
Seca2g02127 582 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 15 138 - -
Seca2g02127 582 Gene3D - 15 139 IPR036426 -
Seca2g02127 582 CDD B_lectin 25 141 IPR001480 -
Seca2g02127 582 Pfam D-mannose binding lectin 65 167 IPR001480 -
Seca2g02127 582 FunFam Os07g0541700 protein 502 582 - -
Seca2g02127 582 SMART blect_4 25 141 IPR001480 -
Seca2g02127 582 Gene3D Transferase(Phosphotransferase) domain 1 502 582 - -
Seca2g02127 582 Pfam PAN-like domain 287 334 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02127 Seca-Chr2 49622747 49625330 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02127 355 581 Receptor kinase-like Gene Family AT4G23190 50.424 1.47e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca2g02127 PK_Tyr_Ser-Thr 8.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02127 - - mtr:25498365 746.503