Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02125 ATGGAAAGCAAAACAGGAAACCCCATATGGGAGAGTCTTCAGCAACCTTCAGATACATTACTTCCCGGTATGAGACTTTCAAGCAACAAAAGAACAGGTGAGAAAGTAAAACTTACATCATGGAAAAGCCCTTCTAATCCATCCATTGGGAGCTTCTATTCTAGGACTGTTGAACGCATAAATATACTTGATGTGTTCATTTGGAATGAAACTCGACCATACTGGCGCTCTGGTCCATGGAATGGTGAGGTTTTTACAGGGATACCTACAATGGAATTTGCGTATCTTAATGGTTTTCATGATGAAGAAGATGAAGAAGGAAACATTGAAATTTATTATACAATACCAAATGAGTCAGAATTTGTATTGTATAAACTGAATTCTCAAGGCCAATTTGAAGAGACATGGTGGGATGATGAGAAGAACGATTTGCTAGTTACATGGACTAGCAGAGAATCGGAGTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGCTGTAATTCACAGAGCTCGCCAATATGTAGCTGTTTGAGAGGGTTTGAACCCAAGAAGAAAGAGGAATGGAATAGACAAAACTGGACTAGGGGATGTGTCAGGAGGACACCTTTGCAGTGTGAAAGGGTCAACAATCAAAACAAAAGTGTGGATACAAAAGCAGATGGGTTTCTGAGACTAGAAATGGTTAAAGTACCAGATTTTGCAGAAGGGTCACGTGTTACACCAGACATGTGCAGAAGCCAATGTTTGGAGAATTGCTCTTGCATTGCATATTCTCATGATGAAGGGATTGGATGTATGACTTGGACTAGGAATCTACTTGACATACAACAATTCTCGAGTACAGGACTTGATCTATATGTTCGTGTAGCCTATACCGAACTTGGTAAAGGAACAAACACAAAAAACATTATTACAGTTACAGTGACAGTAGGAACTGTCATAATTGTCATTTGTGCATATGTCATATGGAGAAGGAATTCTAAGCACTCAGCTAAACTGTGGCACTCAATTAAGTCAACAAGGAGAAAAAACAAGCAAGCTTTCCTACCATTTAGTAAAGGTGGCACATCAGAATCAGAAGATTGTAAAAGGGACAATGTAATTGGAGAACTGTCACAAATTAAACTCCAGGACCTATTACTATTTGATTTTGAAAAGCTTGCTACTGCCACTAACAACTTCCACTCCTCCAACAAACTGGGACAGGGTGGTTTCGGTCCTGTATACAAGGGGAAATTGCAAGACGGTCAGGAAATAGCAGTGAAAAGACTTTCTAGAGCATCTGGACAAGGGCTAGAAGAATTCAAGAATGAAGTAGTCGTGATTCATTCATTAAGAAGTAAACTCCTAGATTGGAGGATGCGCTGTAGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCACAGAGATTCCAGACTAAGAATTATACACAGAGATTTGAAAGCGAGTAATGTCTTGTTAGATGGGGAACTTAATCCAAAAATATCAGACTTTGGTACGGCTAGAATCTTTGGAGCATGTGAAGATCAGGCCAATACTAGCAGAATTGTTGGAACTTATGGTTATATGTCCCCTGAATATGCAATGCAAGGACTATTTTCAGATAAATCAGATGTCTTTAGCTTTGGTGTTTTGATACTAGAGATTGTTAGTGGGAGAAGAAACTCAAGTTTTTATGATAATGAGCATGCTCTGAGCCTTTTAGGATTTGTCTGGTTAAAATGGAGGGAAGACAATATTTTATCTTTAATAGATTCAGGAATATATGATCCTAGTCATCATAAGAATATTTTAAGGTGTATACACATTGGACTGTTGTGTGTCCAAGAACTTGCTGTAGACAGGCCCACTATGGCTACAGTTATTTCTATGCTTAGCAGTGAGGTTGGATTGCTTCCTCCACCAAGTCAACCTGCATTTATCCTGAGGAGAAATATGTTGAGTTCAGTGTCTTCTGAAGAAGGTCATAGATTCGGTTCTATCAACACGGAAAAGGAAACTGGTGTTCTAGAGGATGCAGAATGTATTGCTTGCCTATTTTCTTATTGA 2058 0.3892 MESKTGNPIWESLQQPSDTLLPGMRLSSNKRTGEKVKLTSWKSPSNPSIGSFYSRTVERINILDVFIWNETRPYWRSGPWNGEVFTGIPTMEFAYLNGFHDEEDEEGNIEIYYTIPNESEFVLYKLNSQGQFEETWWDDEKNDLLVTWTSRESECDVYGICGAFASCNSQSSPICSCLRGFEPKKKEEWNRQNWTRGCVRRTPLQCERVNNQNKSVDTKADGFLRLEMVKVPDFAEGSRVTPDMCRSQCLENCSCIAYSHDEGIGCMTWTRNLLDIQQFSSTGLDLYVRVAYTELGKGTNTKNIITVTVTVGTVIIVICAYVIWRRNSKHSAKLWHSIKSTRRKNKQAFLPFSKGGTSESEDCKRDNVIGELSQIKLQDLLLFDFEKLATATNNFHSSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFKNEVVVIHSLRSKLLDWRMRCSIIEGIARGLLYLHRDSRLRIIHRDLKASNVLLDGELNPKISDFGTARIFGACEDQANTSRIVGTYGYMSPEYAMQGLFSDKSDVFSFGVLILEIVSGRRNSSFYDNEHALSLLGFVWLKWREDNILSLIDSGIYDPSHHKNILRCIHIGLLCVQELAVDRPTMATVISMLSSEVGLLPPPSQPAFILRRNMLSSVSSEEGHRFGSINTEKETGVLEDAECIACLFSY. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02125 685 Gene3D Transferase(Phosphotransferase) domain 1 446 633 - -
Seca2g02125 685 SMART ntp_6 218 290 IPR003609 -
Seca2g02125 685 Pfam PAN-like domain 218 276 IPR003609 -
Seca2g02125 685 Gene3D Phosphorylase Kinase; domain 1 357 445 - -
Seca2g02125 685 Pfam S-locus glycoprotein domain 75 184 IPR000858 GO:0048544
Seca2g02125 685 Pfam Protein kinase domain 458 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02125 685 SUPERFAMILY Protein kinase-like (PK-like) 382 653 IPR011009 -
Seca2g02125 685 ProSiteProfiles Protein kinase domain profile. 395 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02125 685 ProSiteProfiles PAN/Apple domain profile. 206 291 IPR003609 -
Seca2g02125 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Seca2g02125 685 SMART serkin_6 395 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02125 685 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 433 636 - -
Seca2g02125 685 CDD PAN_AP_plant 202 291 - -
Seca2g02125 685 SUPERFAMILY alpha-D-mannose-specific plant lectins 4 47 IPR036426 -
Seca2g02125 685 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 451 654 - -
Seca2g02125 685 Pfam D-mannose binding lectin 3 42 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02125 Seca-Chr2 49575950 49578893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02125 293 646 Receptor kinase-like Gene Family AT4G05200 44.133 5.02e-98 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca2g02125 Pkinase 3.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02125 - - mtr:25498365 960.674