Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02096 ATGGACAGAGGAGGCCTGGATGAAGCTGACGGGACCGGCGGCGGAGCAAACGGAGGCCTGGAAGGCGGCGCGTGGCTTACACGCGCCGACAAGGACAGCGGACGGTGGCGGCGCGTGCGAAAGCAGACGGCGGCGCTGCTTTCGGGGATCAATAGATCGGCTCCTTCTGTGTCTGTTGCTAACGTTTCGATTCATCTCTTGTCGAAAATCCGCCATCAAAATCTTGTGTCATTGGAAGGATTTTGTCATGAATCAAAGCATCAGATATTAGTATATGAGTACTTGCCTGGTGGATCCCTGGCTGATCACCTCCATGGTACAAACAATCATAAAACTCCTTTAAGCTGGGTTAGAAGGTTGAAAATTGCAGTCGATGCAGCAAAAGGATTGGATTATTTGCATAATGGAAGTGAACCACGAATCATACACCGTGATGTCAAGTGTAGTAATATCCTCTTGGATATGGATATGAATGCCAAGGTCTGTGACTTTGGCCTCTCTAAGCAAATAACCCAGGCAGATGCAACTCATGTCACCACTGTTGTCAAGGGAACTGCTGGGTATCTAGATCCAGAGTATTATTCCACCCAACAGCTTACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTCTTGGAACTCATTTGTGGCAGGGAGCCATTGATTCACTCTGGGACTCCTGACTCATTCAATTTGGTTTTATGGGCCAAGCCCTATTTTCAGGCGGGTGCATTTGAAATTGTAGATGAAAGCATACAAGGAAGTTTTGATCTGGAGAGCATGAGGAGGGCATCCTTCATTGCTGTGAAGTCAGTGGAAAGGGATGCATCACAGAGGCCTACTATTGGAGAAGTATTAGCAGAGCTAAAGGAAGCTTATAGTATTCAGCTCAGTTTCCTTGAGTCTTGTCAAAATGAGAGTTGA 927 0.466 MDRGGLDEADGTGGGANGGLEGGAWLTRADKDSGRWRRVRKQTAALLSGINRSAPSVSVANVSIHLLSKIRHQNLVSLEGFCHESKHQILVYEYLPGGSLADHLHGTNNHKTPLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMDMNAKVCDFGLSKQITQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLIHSGTPDSFNLVLWAKPYFQAGAFEIVDESIQGSFDLESMRRASFIAVKSVERDASQRPTIGEVLAELKEAYSIQLSFLESCQNES. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02096 308 PANTHER OS01G0750732 PROTEIN 64 296 - -
Seca2g02096 308 SUPERFAMILY Protein kinase-like (PK-like) 64 290 IPR011009 -
Seca2g02096 308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Seca2g02096 308 SMART serkin_6 6 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02096 308 Pfam Protein tyrosine and serine/threonine kinase 63 271 IPR001245 GO:0004672|GO:0006468
Seca2g02096 308 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g02096 308 ProSiteProfiles Protein kinase domain profile. 6 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02096 308 Gene3D Transferase(Phosphotransferase) domain 1 96 303 - -
Seca2g02096 308 Gene3D Phosphorylase Kinase; domain 1 41 95 - -
Seca2g02096 308 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 95 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02096 Seca-Chr2 48109815 48113092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02096 64 301 Receptor kinase-like Gene Family AT5G48740 77.311 1.42e-129 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca2g02096 PK_Tyr_Ser-Thr 6.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02096 - - gmx:100812804 452.595