Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02090 ATGTCTCTTTCAAGACCAATTGAGGGCCGTAAACTTCAGCAATTGATGAAGGAAGGAGGAGCAGCAACGGGAGCACCCTCTTCATGGAATAGGCTCAGCAGCAACCACAGAAACTCTTTCCCTCCTTTACCTCCACACACCAGAAGCAAACTTGAAGATAGCGATGAAGATATGTTCACAGTTCCGGATGTGGAAGCAACACCAAGTAGTAACGTTAATCAAAGCAATGTGACGGATCCTCAGCTTCAAACTGCAGGTGGCATCGCCGGAAAGCGCCGCCGCGGAAAAAATCCAGTAGACAAGGAGTATAGACGCCTCAAGAGGCTGCTGAGGAACAGGGTTTCTGCCCAACAAGCCCGTGAAAGGAAAAAGGTATACGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGGAAGACAAGAATTCCAAGTTAGAAGAGTGTATCTCGACTTTGATCAATGAGAACACCATGCTCCGCAAGGTAATTAATATAATAATACATGATCTGAAACAAATTAATATTCATTTGAATCTGCTAGGATAA 543 0.442 MSLSRPIEGRKLQQLMKEGGAATGAPSSWNRLSSNHRNSFPPLPPHTRSKLEDSDEDMFTVPDVEATPSSNVNQSNVTDPQLQTAGGIAGKRRRGKNPVDKEYRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELEDKNSKLEECISTLINENTMLRKVINIIIHDLKQINIHLNLLG. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02090 180 Coils Coil 120 154 - -
Seca2g02090 180 SUPERFAMILY Leucine zipper domain 103 161 IPR046347 GO:0003700|GO:0006355
Seca2g02090 180 CDD bZIP_HY5-like 114 155 - -
Seca2g02090 180 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 22 160 IPR044280 GO:0000981|GO:0045944
Seca2g02090 180 Pfam bZIP transcription factor 101 160 IPR004827 GO:0003700|GO:0006355
Seca2g02090 180 SMART brlzneu 100 164 IPR004827 GO:0003700|GO:0006355
Seca2g02090 180 MobiDBLite consensus disorder prediction 26 42 - -
Seca2g02090 180 MobiDBLite consensus disorder prediction 16 99 - -
Seca2g02090 180 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 107 122 IPR004827 GO:0003700|GO:0006355
Seca2g02090 180 MobiDBLite consensus disorder prediction 64 83 - -
Seca2g02090 180 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 102 165 IPR004827 GO:0003700|GO:0006355
Seca2g02090 180 Gene3D Single helix bin 123 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02090 Seca-Chr2 47897047 47904107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02090 77 162 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 73.864 1.41e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca2g02090 bZIP_1 2.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02090 K16241 - gmx:100783826 207.994